--- /dev/null
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package org.vamsas.objects.core;\r
+\r
+ //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+import java.util.Enumeration;\r
+import java.util.Vector;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+\r
+/**\r
+ * Specify an ordered set of positions and/or regions on the\r
+ * principle\r
+ * dimension of some associated vamsas object Keeping to jaxb-1.0\r
+ * specification for the moment - this choice should\r
+ * become a substitution group when we use jaxb-2.0 capable\r
+ * bindings\r
+ * \r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public abstract class RangeType extends org.vamsas.client.Vobject \r
+implements java.io.Serializable\r
+{\r
+\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Internal choice value storage\r
+ */\r
+ private java.lang.Object _choiceValue;\r
+\r
+ /**\r
+ * a position within the associated object's coordinate system\r
+ * \r
+ */\r
+ private java.util.Vector _posList;\r
+\r
+ /**\r
+ * a region from start to end, with flag for inclusivity of\r
+ * terminii \r
+ */\r
+ private java.util.Vector _segList;\r
+\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public RangeType() \r
+ {\r
+ super();\r
+ _posList = new Vector();\r
+ _segList = new Vector();\r
+ } //-- org.vamsas.objects.core.RangeType()\r
+\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method addPos\r
+ * \r
+ * \r
+ * \r
+ * @param vPos\r
+ */\r
+ public void addPos(org.vamsas.objects.core.Pos vPos)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _posList.addElement(vPos);\r
+ } //-- void addPos(org.vamsas.objects.core.Pos) \r
+\r
+ /**\r
+ * Method addPos\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @param vPos\r
+ */\r
+ public void addPos(int index, org.vamsas.objects.core.Pos vPos)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _posList.insertElementAt(vPos, index);\r
+ } //-- void addPos(int, org.vamsas.objects.core.Pos) \r
+\r
+ /**\r
+ * Method addSeg\r
+ * \r
+ * \r
+ * \r
+ * @param vSeg\r
+ */\r
+ public void addSeg(org.vamsas.objects.core.Seg vSeg)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _segList.addElement(vSeg);\r
+ } //-- void addSeg(org.vamsas.objects.core.Seg) \r
+\r
+ /**\r
+ * Method addSeg\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @param vSeg\r
+ */\r
+ public void addSeg(int index, org.vamsas.objects.core.Seg vSeg)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ _segList.insertElementAt(vSeg, index);\r
+ } //-- void addSeg(int, org.vamsas.objects.core.Seg) \r
+\r
+ /**\r
+ * Method enumeratePos\r
+ * \r
+ * \r
+ * \r
+ * @return Enumeration\r
+ */\r
+ public java.util.Enumeration enumeratePos()\r
+ {\r
+ return _posList.elements();\r
+ } //-- java.util.Enumeration enumeratePos() \r
+\r
+ /**\r
+ * Method enumerateSeg\r
+ * \r
+ * \r
+ * \r
+ * @return Enumeration\r
+ */\r
+ public java.util.Enumeration enumerateSeg()\r
+ {\r
+ return _segList.elements();\r
+ } //-- java.util.Enumeration enumerateSeg() \r
+\r
+ /**\r
+ * Note: hashCode() has not been overriden\r
+ * \r
+ * @param obj\r
+ * @return boolean\r
+ */\r
+ public boolean equals(java.lang.Object obj)\r
+ {\r
+ if ( this == obj )\r
+ return true;\r
+ \r
+ if (super.equals(obj)==false)\r
+ return false;\r
+ \r
+ if (obj instanceof RangeType) {\r
+ \r
+ RangeType temp = (RangeType)obj;\r
+ if (this._choiceValue != null) {\r
+ if (temp._choiceValue == null) return false;\r
+ else if (!(this._choiceValue.equals(temp._choiceValue))) \r
+ return false;\r
+ }\r
+ else if (temp._choiceValue != null)\r
+ return false;\r
+ if (this._posList != null) {\r
+ if (temp._posList == null) return false;\r
+ else if (!(this._posList.equals(temp._posList))) \r
+ return false;\r
+ }\r
+ else if (temp._posList != null)\r
+ return false;\r
+ if (this._segList != null) {\r
+ if (temp._segList == null) return false;\r
+ else if (!(this._segList.equals(temp._segList))) \r
+ return false;\r
+ }\r
+ else if (temp._segList != null)\r
+ return false;\r
+ return true;\r
+ }\r
+ return false;\r
+ } //-- boolean equals(java.lang.Object) \r
+\r
+ /**\r
+ * Returns the value of field 'choiceValue'. The field\r
+ * 'choiceValue' has the following description: Internal choice\r
+ * value storage\r
+ * \r
+ * @return Object\r
+ * @return the value of field 'choiceValue'.\r
+ */\r
+ public java.lang.Object getChoiceValue()\r
+ {\r
+ return this._choiceValue;\r
+ } //-- java.lang.Object getChoiceValue() \r
+\r
+ /**\r
+ * Method getPos\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @return Pos\r
+ */\r
+ public org.vamsas.objects.core.Pos getPos(int index)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ((index < 0) || (index > _posList.size())) {\r
+ throw new IndexOutOfBoundsException("getPos: Index value '"+index+"' not in range [0.."+_posList.size()+ "]");\r
+ }\r
+ \r
+ return (org.vamsas.objects.core.Pos) _posList.elementAt(index);\r
+ } //-- org.vamsas.objects.core.Pos getPos(int) \r
+\r
+ /**\r
+ * Method getPos\r
+ * \r
+ * \r
+ * \r
+ * @return Pos\r
+ */\r
+ public org.vamsas.objects.core.Pos[] getPos()\r
+ {\r
+ int size = _posList.size();\r
+ org.vamsas.objects.core.Pos[] mArray = new org.vamsas.objects.core.Pos[size];\r
+ for (int index = 0; index < size; index++) {\r
+ mArray[index] = (org.vamsas.objects.core.Pos) _posList.elementAt(index);\r
+ }\r
+ return mArray;\r
+ } //-- org.vamsas.objects.core.Pos[] getPos() \r
+\r
+ /**\r
+ * Method getPosCount\r
+ * \r
+ * \r
+ * \r
+ * @return int\r
+ */\r
+ public int getPosCount()\r
+ {\r
+ return _posList.size();\r
+ } //-- int getPosCount() \r
+\r
+ /**\r
+ * Method getSeg\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @return Seg\r
+ */\r
+ public org.vamsas.objects.core.Seg getSeg(int index)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ((index < 0) || (index > _segList.size())) {\r
+ throw new IndexOutOfBoundsException("getSeg: Index value '"+index+"' not in range [0.."+_segList.size()+ "]");\r
+ }\r
+ \r
+ return (org.vamsas.objects.core.Seg) _segList.elementAt(index);\r
+ } //-- org.vamsas.objects.core.Seg getSeg(int) \r
+\r
+ /**\r
+ * Method getSeg\r
+ * \r
+ * \r
+ * \r
+ * @return Seg\r
+ */\r
+ public org.vamsas.objects.core.Seg[] getSeg()\r
+ {\r
+ int size = _segList.size();\r
+ org.vamsas.objects.core.Seg[] mArray = new org.vamsas.objects.core.Seg[size];\r
+ for (int index = 0; index < size; index++) {\r
+ mArray[index] = (org.vamsas.objects.core.Seg) _segList.elementAt(index);\r
+ }\r
+ return mArray;\r
+ } //-- org.vamsas.objects.core.Seg[] getSeg() \r
+\r
+ /**\r
+ * Method getSegCount\r
+ * \r
+ * \r
+ * \r
+ * @return int\r
+ */\r
+ public int getSegCount()\r
+ {\r
+ return _segList.size();\r
+ } //-- int getSegCount() \r
+\r
+ /**\r
+ * Method isValid\r
+ * \r
+ * \r
+ * \r
+ * @return boolean\r
+ */\r
+ public boolean isValid()\r
+ {\r
+ try {\r
+ validate();\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex) {\r
+ return false;\r
+ }\r
+ return true;\r
+ } //-- boolean isValid() \r
+\r
+ /**\r
+ * Method removeAllPos\r
+ * \r
+ */\r
+ public void removeAllPos()\r
+ {\r
+ _posList.removeAllElements();\r
+ } //-- void removeAllPos() \r
+\r
+ /**\r
+ * Method removeAllSeg\r
+ * \r
+ */\r
+ public void removeAllSeg()\r
+ {\r
+ _segList.removeAllElements();\r
+ } //-- void removeAllSeg() \r
+\r
+ /**\r
+ * Method removePos\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @return Pos\r
+ */\r
+ public org.vamsas.objects.core.Pos removePos(int index)\r
+ {\r
+ java.lang.Object obj = _posList.elementAt(index);\r
+ _posList.removeElementAt(index);\r
+ return (org.vamsas.objects.core.Pos) obj;\r
+ } //-- org.vamsas.objects.core.Pos removePos(int) \r
+\r
+ /**\r
+ * Method removeSeg\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @return Seg\r
+ */\r
+ public org.vamsas.objects.core.Seg removeSeg(int index)\r
+ {\r
+ java.lang.Object obj = _segList.elementAt(index);\r
+ _segList.removeElementAt(index);\r
+ return (org.vamsas.objects.core.Seg) obj;\r
+ } //-- org.vamsas.objects.core.Seg removeSeg(int) \r
+\r
+ /**\r
+ * Method setPos\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @param vPos\r
+ */\r
+ public void setPos(int index, org.vamsas.objects.core.Pos vPos)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ((index < 0) || (index > _posList.size())) {\r
+ throw new IndexOutOfBoundsException("setPos: Index value '"+index+"' not in range [0.."+_posList.size()+ "]");\r
+ }\r
+ _posList.setElementAt(vPos, index);\r
+ } //-- void setPos(int, org.vamsas.objects.core.Pos) \r
+\r
+ /**\r
+ * Method setPos\r
+ * \r
+ * \r
+ * \r
+ * @param posArray\r
+ */\r
+ public void setPos(org.vamsas.objects.core.Pos[] posArray)\r
+ {\r
+ //-- copy array\r
+ _posList.removeAllElements();\r
+ for (int i = 0; i < posArray.length; i++) {\r
+ _posList.addElement(posArray[i]);\r
+ }\r
+ } //-- void setPos(org.vamsas.objects.core.Pos) \r
+\r
+ /**\r
+ * Method setSeg\r
+ * \r
+ * \r
+ * \r
+ * @param index\r
+ * @param vSeg\r
+ */\r
+ public void setSeg(int index, org.vamsas.objects.core.Seg vSeg)\r
+ throws java.lang.IndexOutOfBoundsException\r
+ {\r
+ //-- check bounds for index\r
+ if ((index < 0) || (index > _segList.size())) {\r
+ throw new IndexOutOfBoundsException("setSeg: Index value '"+index+"' not in range [0.."+_segList.size()+ "]");\r
+ }\r
+ _segList.setElementAt(vSeg, index);\r
+ } //-- void setSeg(int, org.vamsas.objects.core.Seg) \r
+\r
+ /**\r
+ * Method setSeg\r
+ * \r
+ * \r
+ * \r
+ * @param segArray\r
+ */\r
+ public void setSeg(org.vamsas.objects.core.Seg[] segArray)\r
+ {\r
+ //-- copy array\r
+ _segList.removeAllElements();\r
+ for (int i = 0; i < segArray.length; i++) {\r
+ _segList.addElement(segArray[i]);\r
+ }\r
+ } //-- void setSeg(org.vamsas.objects.core.Seg) \r
+\r
+ /**\r
+ * Method validate\r
+ * \r
+ */\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
+ {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+ validator.validate(this);\r
+ } //-- void validate() \r
+\r
+}\r
git://source.jalview.org / vamsas.git / blobdiff