+++ /dev/null
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
- * Schema.
- * $Id:Tree.java 264 2006-12-14 17:42:54Z JimP $
- */
-
-package org.vamsas.objects.core;
-
- //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import java.util.Enumeration;
-import java.util.Vector;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
-
-/**
- * Class Tree.
- *
- * @version $Revision:264 $ $Date:2006-12-14 17:42:54 +0000 (Thu, 14 Dec 2006) $
- */
-public class Tree extends uk.ac.vamsas.client.Vobject
-implements java.io.Serializable
-{
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * Primary Key for vamsas object referencing
- */
- private java.lang.String _id;
-
- /**
- * Field _modifiable
- */
- private java.lang.String _modifiable;
-
- /**
- * Field _title
- */
- private java.lang.String _title;
-
- /**
- * Field _newickList
- */
- private java.util.Vector _newickList;
-
- /**
- * Field _propertyList
- */
- private java.util.Vector _propertyList;
-
- /**
- * Field _provenance
- */
- private org.vamsas.objects.core.Provenance _provenance;
-
-
- //----------------/
- //- Constructors -/
- //----------------/
-
- public Tree()
- {
- super();
- _newickList = new Vector();
- _propertyList = new Vector();
- } //-- org.vamsas.objects.core.Tree()
-
-
- //-----------/
- //- Methods -/
- //-----------/
-
- /**
- * Method addNewick
- *
- *
- *
- * @param vNewick
- */
- public void addNewick(org.vamsas.objects.core.Newick vNewick)
- throws java.lang.IndexOutOfBoundsException
- {
- _newickList.addElement(vNewick);
- } //-- void addNewick(org.vamsas.objects.core.Newick)
-
- /**
- * Method addNewick
- *
- *
- *
- * @param index
- * @param vNewick
- */
- public void addNewick(int index, org.vamsas.objects.core.Newick vNewick)
- throws java.lang.IndexOutOfBoundsException
- {
- _newickList.insertElementAt(vNewick, index);
- } //-- void addNewick(int, org.vamsas.objects.core.Newick)
-
- /**
- * Method addProperty
- *
- *
- *
- * @param vProperty
- */
- public void addProperty(org.vamsas.objects.core.Property vProperty)
- throws java.lang.IndexOutOfBoundsException
- {
- _propertyList.addElement(vProperty);
- } //-- void addProperty(org.vamsas.objects.core.Property)
-
- /**
- * Method addProperty
- *
- *
- *
- * @param index
- * @param vProperty
- */
- public void addProperty(int index, org.vamsas.objects.core.Property vProperty)
- throws java.lang.IndexOutOfBoundsException
- {
- _propertyList.insertElementAt(vProperty, index);
- } //-- void addProperty(int, org.vamsas.objects.core.Property)
-
- /**
- * Method enumerateNewick
- *
- *
- *
- * @return Enumeration
- */
- public java.util.Enumeration enumerateNewick()
- {
- return _newickList.elements();
- } //-- java.util.Enumeration enumerateNewick()
-
- /**
- * Method enumerateProperty
- *
- *
- *
- * @return Enumeration
- */
- public java.util.Enumeration enumerateProperty()
- {
- return _propertyList.elements();
- } //-- java.util.Enumeration enumerateProperty()
-
- /**
- * Note: hashCode() has not been overriden
- *
- * @param obj
- * @return boolean
- */
- public boolean equals(java.lang.Object obj)
- {
- if ( this == obj )
- return true;
-
- if (super.equals(obj)==false)
- return false;
-
- if (obj instanceof Tree) {
-
- Tree temp = (Tree)obj;
- if (this._id != null) {
- if (temp._id == null) return false;
- else if (!(this._id.equals(temp._id)))
- return false;
- }
- else if (temp._id != null)
- return false;
- if (this._modifiable != null) {
- if (temp._modifiable == null) return false;
- else if (!(this._modifiable.equals(temp._modifiable)))
- return false;
- }
- else if (temp._modifiable != null)
- return false;
- if (this._title != null) {
- if (temp._title == null) return false;
- else if (!(this._title.equals(temp._title)))
- return false;
- }
- else if (temp._title != null)
- return false;
- if (this._newickList != null) {
- if (temp._newickList == null) return false;
- else if (!(this._newickList.equals(temp._newickList)))
- return false;
- }
- else if (temp._newickList != null)
- return false;
- if (this._propertyList != null) {
- if (temp._propertyList == null) return false;
- else if (!(this._propertyList.equals(temp._propertyList)))
- return false;
- }
- else if (temp._propertyList != null)
- return false;
- if (this._provenance != null) {
- if (temp._provenance == null) return false;
- else if (!(this._provenance.equals(temp._provenance)))
- return false;
- }
- else if (temp._provenance != null)
- return false;
- return true;
- }
- return false;
- } //-- boolean equals(java.lang.Object)
-
- /**
- * Returns the value of field 'id'. The field 'id' has the
- * following description: Primary Key for vamsas object
- * referencing
- *
- * @return String
- * @return the value of field 'id'.
- */
- public java.lang.String getId()
- {
- return this._id;
- } //-- java.lang.String getId()
-
- /**
- * Returns the value of field 'modifiable'.
- *
- * @return String
- * @return the value of field 'modifiable'.
- */
- public java.lang.String getModifiable()
- {
- return this._modifiable;
- } //-- java.lang.String getModifiable()
-
- /**
- * Method getNewick
- *
- *
- *
- * @param index
- * @return Newick
- */
- public org.vamsas.objects.core.Newick getNewick(int index)
- throws java.lang.IndexOutOfBoundsException
- {
- //-- check bounds for index
- if ((index < 0) || (index > _newickList.size())) {
- throw new IndexOutOfBoundsException("getNewick: Index value '"+index+"' not in range [0.."+_newickList.size()+ "]");
- }
-
- return (org.vamsas.objects.core.Newick) _newickList.elementAt(index);
- } //-- org.vamsas.objects.core.Newick getNewick(int)
-
- /**
- * Method getNewick
- *
- *
- *
- * @return Newick
- */
- public org.vamsas.objects.core.Newick[] getNewick()
- {
- int size = _newickList.size();
- org.vamsas.objects.core.Newick[] mArray = new org.vamsas.objects.core.Newick[size];
- for (int index = 0; index < size; index++) {
- mArray[index] = (org.vamsas.objects.core.Newick) _newickList.elementAt(index);
- }
- return mArray;
- } //-- org.vamsas.objects.core.Newick[] getNewick()
-
- /**
- * Method getNewickCount
- *
- *
- *
- * @return int
- */
- public int getNewickCount()
- {
- return _newickList.size();
- } //-- int getNewickCount()
-
- /**
- * Method getProperty
- *
- *
- *
- * @param index
- * @return Property
- */
- public org.vamsas.objects.core.Property getProperty(int index)
- throws java.lang.IndexOutOfBoundsException
- {
- //-- check bounds for index
- if ((index < 0) || (index > _propertyList.size())) {
- throw new IndexOutOfBoundsException("getProperty: Index value '"+index+"' not in range [0.."+_propertyList.size()+ "]");
- }
-
- return (org.vamsas.objects.core.Property) _propertyList.elementAt(index);
- } //-- org.vamsas.objects.core.Property getProperty(int)
-
- /**
- * Method getProperty
- *
- *
- *
- * @return Property
- */
- public org.vamsas.objects.core.Property[] getProperty()
- {
- int size = _propertyList.size();
- org.vamsas.objects.core.Property[] mArray = new org.vamsas.objects.core.Property[size];
- for (int index = 0; index < size; index++) {
- mArray[index] = (org.vamsas.objects.core.Property) _propertyList.elementAt(index);
- }
- return mArray;
- } //-- org.vamsas.objects.core.Property[] getProperty()
-
- /**
- * Method getPropertyCount
- *
- *
- *
- * @return int
- */
- public int getPropertyCount()
- {
- return _propertyList.size();
- } //-- int getPropertyCount()
-
- /**
- * Returns the value of field 'provenance'.
- *
- * @return Provenance
- * @return the value of field 'provenance'.
- */
- public org.vamsas.objects.core.Provenance getProvenance()
- {
- return this._provenance;
- } //-- org.vamsas.objects.core.Provenance getProvenance()
-
- /**
- * Returns the value of field 'title'.
- *
- * @return String
- * @return the value of field 'title'.
- */
- public java.lang.String getTitle()
- {
- return this._title;
- } //-- java.lang.String getTitle()
-
- /**
- * Method isValid
- *
- *
- *
- * @return boolean
- */
- public boolean isValid()
- {
- try {
- validate();
- }
- catch (org.exolab.castor.xml.ValidationException vex) {
- return false;
- }
- return true;
- } //-- boolean isValid()
-
- /**
- * Method marshal
- *
- *
- *
- * @param out
- */
- public void marshal(java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
-
- Marshaller.marshal(this, out);
- } //-- void marshal(java.io.Writer)
-
- /**
- * Method marshal
- *
- *
- *
- * @param handler
- */
- public void marshal(org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
-
- Marshaller.marshal(this, handler);
- } //-- void marshal(org.xml.sax.ContentHandler)
-
- /**
- * Method removeAllNewick
- *
- */
- public void removeAllNewick()
- {
- _newickList.removeAllElements();
- } //-- void removeAllNewick()
-
- /**
- * Method removeAllProperty
- *
- */
- public void removeAllProperty()
- {
- _propertyList.removeAllElements();
- } //-- void removeAllProperty()
-
- /**
- * Method removeNewick
- *
- *
- *
- * @param index
- * @return Newick
- */
- public org.vamsas.objects.core.Newick removeNewick(int index)
- {
- java.lang.Object obj = _newickList.elementAt(index);
- _newickList.removeElementAt(index);
- return (org.vamsas.objects.core.Newick) obj;
- } //-- org.vamsas.objects.core.Newick removeNewick(int)
-
- /**
- * Method removeProperty
- *
- *
- *
- * @param index
- * @return Property
- */
- public org.vamsas.objects.core.Property removeProperty(int index)
- {
- java.lang.Object obj = _propertyList.elementAt(index);
- _propertyList.removeElementAt(index);
- return (org.vamsas.objects.core.Property) obj;
- } //-- org.vamsas.objects.core.Property removeProperty(int)
-
- /**
- * Sets the value of field 'id'. The field 'id' has the
- * following description: Primary Key for vamsas object
- * referencing
- *
- * @param id the value of field 'id'.
- */
- public void setId(java.lang.String id)
- {
- this._id = id;
- } //-- void setId(java.lang.String)
-
- /**
- * Sets the value of field 'modifiable'.
- *
- * @param modifiable the value of field 'modifiable'.
- */
- public void setModifiable(java.lang.String modifiable)
- {
- this._modifiable = modifiable;
- } //-- void setModifiable(java.lang.String)
-
- /**
- * Method setNewick
- *
- *
- *
- * @param index
- * @param vNewick
- */
- public void setNewick(int index, org.vamsas.objects.core.Newick vNewick)
- throws java.lang.IndexOutOfBoundsException
- {
- //-- check bounds for index
- if ((index < 0) || (index > _newickList.size())) {
- throw new IndexOutOfBoundsException("setNewick: Index value '"+index+"' not in range [0.."+_newickList.size()+ "]");
- }
- _newickList.setElementAt(vNewick, index);
- } //-- void setNewick(int, org.vamsas.objects.core.Newick)
-
- /**
- * Method setNewick
- *
- *
- *
- * @param newickArray
- */
- public void setNewick(org.vamsas.objects.core.Newick[] newickArray)
- {
- //-- copy array
- _newickList.removeAllElements();
- for (int i = 0; i < newickArray.length; i++) {
- _newickList.addElement(newickArray[i]);
- }
- } //-- void setNewick(org.vamsas.objects.core.Newick)
-
- /**
- * Method setProperty
- *
- *
- *
- * @param index
- * @param vProperty
- */
- public void setProperty(int index, org.vamsas.objects.core.Property vProperty)
- throws java.lang.IndexOutOfBoundsException
- {
- //-- check bounds for index
- if ((index < 0) || (index > _propertyList.size())) {
- throw new IndexOutOfBoundsException("setProperty: Index value '"+index+"' not in range [0.."+_propertyList.size()+ "]");
- }
- _propertyList.setElementAt(vProperty, index);
- } //-- void setProperty(int, org.vamsas.objects.core.Property)
-
- /**
- * Method setProperty
- *
- *
- *
- * @param propertyArray
- */
- public void setProperty(org.vamsas.objects.core.Property[] propertyArray)
- {
- //-- copy array
- _propertyList.removeAllElements();
- for (int i = 0; i < propertyArray.length; i++) {
- _propertyList.addElement(propertyArray[i]);
- }
- } //-- void setProperty(org.vamsas.objects.core.Property)
-
- /**
- * Sets the value of field 'provenance'.
- *
- * @param provenance the value of field 'provenance'.
- */
- public void setProvenance(org.vamsas.objects.core.Provenance provenance)
- {
- this._provenance = provenance;
- } //-- void setProvenance(org.vamsas.objects.core.Provenance)
-
- /**
- * Sets the value of field 'title'.
- *
- * @param title the value of field 'title'.
- */
- public void setTitle(java.lang.String title)
- {
- this._title = title;
- } //-- void setTitle(java.lang.String)
-
- /**
- * Method unmarshal
- *
- *
- *
- * @param reader
- * @return Tree
- */
- public static org.vamsas.objects.core.Tree unmarshal(java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
- {
- return (org.vamsas.objects.core.Tree) Unmarshaller.unmarshal(org.vamsas.objects.core.Tree.class, reader);
- } //-- org.vamsas.objects.core.Tree unmarshal(java.io.Reader)
-
- /**
- * Method validate
- *
- */
- public void validate()
- throws org.exolab.castor.xml.ValidationException
- {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- } //-- void validate()
-
-}
git://source.jalview.org / vamsas.git / blobdiff