/*
* This class was automatically generated with
- * <a href="http://www.castor.org">Castor 0.9.9M1</a>, using an XML
+ * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
* Schema.
* $Id$
*/
//--------------------------/
/**
- * Field _treeList
+ * Field _id
*/
- private java.util.Vector _treeList;
+ private java.lang.String _id;
+
+ /**
+ * Field _dendroList
+ */
+ private java.util.Vector _dendroList;
/**
* Field _sequenceSetList
public VAMSAS()
{
super();
- _treeList = new Vector();
+ _dendroList = new Vector();
_sequenceSetList = new Vector();
} //-- org.vamsas.objects.core.VAMSAS()
//-----------/
/**
- * Method addSequenceSet
+ * Method addDendro
*
*
*
- * @param vSequenceSet
+ * @param vDendro
*/
- public void addSequenceSet(org.vamsas.objects.core.SequenceSet vSequenceSet)
+ public void addDendro(org.vamsas.objects.core.Dendro vDendro)
throws java.lang.IndexOutOfBoundsException
{
- _sequenceSetList.addElement(vSequenceSet);
- } //-- void addSequenceSet(org.vamsas.objects.core.SequenceSet)
+ _dendroList.addElement(vDendro);
+ } //-- void addDendro(org.vamsas.objects.core.Dendro)
/**
- * Method addSequenceSet
+ * Method addDendro
*
*
*
* @param index
- * @param vSequenceSet
+ * @param vDendro
*/
- public void addSequenceSet(int index, org.vamsas.objects.core.SequenceSet vSequenceSet)
+ public void addDendro(int index, org.vamsas.objects.core.Dendro vDendro)
throws java.lang.IndexOutOfBoundsException
{
- _sequenceSetList.insertElementAt(vSequenceSet, index);
- } //-- void addSequenceSet(int, org.vamsas.objects.core.SequenceSet)
+ _dendroList.insertElementAt(vDendro, index);
+ } //-- void addDendro(int, org.vamsas.objects.core.Dendro)
/**
- * Method addTree
+ * Method addSequenceSet
*
*
*
- * @param vTree
+ * @param vSequenceSet
*/
- public void addTree(java.lang.String vTree)
+ public void addSequenceSet(org.vamsas.objects.core.SequenceSet vSequenceSet)
throws java.lang.IndexOutOfBoundsException
{
- _treeList.addElement(vTree);
- } //-- void addTree(java.lang.String)
+ _sequenceSetList.addElement(vSequenceSet);
+ } //-- void addSequenceSet(org.vamsas.objects.core.SequenceSet)
/**
- * Method addTree
+ * Method addSequenceSet
*
*
*
* @param index
- * @param vTree
+ * @param vSequenceSet
*/
- public void addTree(int index, java.lang.String vTree)
+ public void addSequenceSet(int index, org.vamsas.objects.core.SequenceSet vSequenceSet)
throws java.lang.IndexOutOfBoundsException
{
- _treeList.insertElementAt(vTree, index);
- } //-- void addTree(int, java.lang.String)
+ _sequenceSetList.insertElementAt(vSequenceSet, index);
+ } //-- void addSequenceSet(int, org.vamsas.objects.core.SequenceSet)
/**
- * Method enumerateSequenceSet
+ * Method enumerateDendro
*
*
*
* @return Enumeration
*/
- public java.util.Enumeration enumerateSequenceSet()
+ public java.util.Enumeration enumerateDendro()
{
- return _sequenceSetList.elements();
- } //-- java.util.Enumeration enumerateSequenceSet()
+ return _dendroList.elements();
+ } //-- java.util.Enumeration enumerateDendro()
/**
- * Method enumerateTree
+ * Method enumerateSequenceSet
*
*
*
* @return Enumeration
*/
- public java.util.Enumeration enumerateTree()
+ public java.util.Enumeration enumerateSequenceSet()
{
- return _treeList.elements();
- } //-- java.util.Enumeration enumerateTree()
+ return _sequenceSetList.elements();
+ } //-- java.util.Enumeration enumerateSequenceSet()
/**
* Note: hashCode() has not been overriden
if (obj instanceof VAMSAS) {
VAMSAS temp = (VAMSAS)obj;
- if (this._treeList != null) {
- if (temp._treeList == null) return false;
- else if (!(this._treeList.equals(temp._treeList)))
+ if (this._id != null) {
+ if (temp._id == null) return false;
+ else if (!(this._id.equals(temp._id)))
return false;
}
- else if (temp._treeList != null)
+ else if (temp._id != null)
+ return false;
+ if (this._dendroList != null) {
+ if (temp._dendroList == null) return false;
+ else if (!(this._dendroList.equals(temp._dendroList)))
+ return false;
+ }
+ else if (temp._dendroList != null)
return false;
if (this._sequenceSetList != null) {
if (temp._sequenceSetList == null) return false;
} //-- boolean equals(java.lang.Object)
/**
- * Method getSequenceSet
+ * Method getDendro
*
*
*
* @param index
- * @return SequenceSet
+ * @return Dendro
*/
- public org.vamsas.objects.core.SequenceSet getSequenceSet(int index)
+ public org.vamsas.objects.core.Dendro getDendro(int index)
throws java.lang.IndexOutOfBoundsException
{
//-- check bounds for index
- if ((index < 0) || (index > _sequenceSetList.size())) {
- throw new IndexOutOfBoundsException("getSequenceSet: Index value '"+index+"' not in range [0.."+_sequenceSetList.size()+ "]");
+ if ((index < 0) || (index > _dendroList.size())) {
+ throw new IndexOutOfBoundsException("getDendro: Index value '"+index+"' not in range [0.."+_dendroList.size()+ "]");
}
- return (org.vamsas.objects.core.SequenceSet) _sequenceSetList.elementAt(index);
- } //-- org.vamsas.objects.core.SequenceSet getSequenceSet(int)
+ return (org.vamsas.objects.core.Dendro) _dendroList.elementAt(index);
+ } //-- org.vamsas.objects.core.Dendro getDendro(int)
/**
- * Method getSequenceSet
+ * Method getDendro
*
*
*
- * @return SequenceSet
+ * @return Dendro
*/
- public org.vamsas.objects.core.SequenceSet[] getSequenceSet()
+ public org.vamsas.objects.core.Dendro[] getDendro()
{
- int size = _sequenceSetList.size();
- org.vamsas.objects.core.SequenceSet[] mArray = new org.vamsas.objects.core.SequenceSet[size];
+ int size = _dendroList.size();
+ org.vamsas.objects.core.Dendro[] mArray = new org.vamsas.objects.core.Dendro[size];
for (int index = 0; index < size; index++) {
- mArray[index] = (org.vamsas.objects.core.SequenceSet) _sequenceSetList.elementAt(index);
+ mArray[index] = (org.vamsas.objects.core.Dendro) _dendroList.elementAt(index);
}
return mArray;
- } //-- org.vamsas.objects.core.SequenceSet[] getSequenceSet()
+ } //-- org.vamsas.objects.core.Dendro[] getDendro()
/**
- * Method getSequenceSetCount
+ * Method getDendroCount
*
*
*
* @return int
*/
- public int getSequenceSetCount()
+ public int getDendroCount()
{
- return _sequenceSetList.size();
- } //-- int getSequenceSetCount()
+ return _dendroList.size();
+ } //-- int getDendroCount()
/**
- * Method getTree
+ * Returns the value of field 'id'.
+ *
+ * @return String
+ * @return the value of field 'id'.
+ */
+ public java.lang.String getId()
+ {
+ return this._id;
+ } //-- java.lang.String getId()
+
+ /**
+ * Method getSequenceSet
*
*
*
* @param index
- * @return String
+ * @return SequenceSet
*/
- public java.lang.String getTree(int index)
+ public org.vamsas.objects.core.SequenceSet getSequenceSet(int index)
throws java.lang.IndexOutOfBoundsException
{
//-- check bounds for index
- if ((index < 0) || (index > _treeList.size())) {
- throw new IndexOutOfBoundsException("getTree: Index value '"+index+"' not in range [0.."+_treeList.size()+ "]");
+ if ((index < 0) || (index > _sequenceSetList.size())) {
+ throw new IndexOutOfBoundsException("getSequenceSet: Index value '"+index+"' not in range [0.."+_sequenceSetList.size()+ "]");
}
- return (String)_treeList.elementAt(index);
- } //-- java.lang.String getTree(int)
+ return (org.vamsas.objects.core.SequenceSet) _sequenceSetList.elementAt(index);
+ } //-- org.vamsas.objects.core.SequenceSet getSequenceSet(int)
/**
- * Method getTree
+ * Method getSequenceSet
*
*
*
- * @return String
+ * @return SequenceSet
*/
- public java.lang.String[] getTree()
+ public org.vamsas.objects.core.SequenceSet[] getSequenceSet()
{
- int size = _treeList.size();
- java.lang.String[] mArray = new java.lang.String[size];
+ int size = _sequenceSetList.size();
+ org.vamsas.objects.core.SequenceSet[] mArray = new org.vamsas.objects.core.SequenceSet[size];
for (int index = 0; index < size; index++) {
- mArray[index] = (String)_treeList.elementAt(index);
+ mArray[index] = (org.vamsas.objects.core.SequenceSet) _sequenceSetList.elementAt(index);
}
return mArray;
- } //-- java.lang.String[] getTree()
+ } //-- org.vamsas.objects.core.SequenceSet[] getSequenceSet()
/**
- * Method getTreeCount
+ * Method getSequenceSetCount
*
*
*
* @return int
*/
- public int getTreeCount()
+ public int getSequenceSetCount()
{
- return _treeList.size();
- } //-- int getTreeCount()
+ return _sequenceSetList.size();
+ } //-- int getSequenceSetCount()
/**
* Method isValid
} //-- void marshal(org.xml.sax.ContentHandler)
/**
+ * Method removeAllDendro
+ *
+ */
+ public void removeAllDendro()
+ {
+ _dendroList.removeAllElements();
+ } //-- void removeAllDendro()
+
+ /**
* Method removeAllSequenceSet
*
*/
} //-- void removeAllSequenceSet()
/**
- * Method removeAllTree
+ * Method removeDendro
+ *
*
+ *
+ * @param index
+ * @return Dendro
*/
- public void removeAllTree()
+ public org.vamsas.objects.core.Dendro removeDendro(int index)
{
- _treeList.removeAllElements();
- } //-- void removeAllTree()
+ java.lang.Object obj = _dendroList.elementAt(index);
+ _dendroList.removeElementAt(index);
+ return (org.vamsas.objects.core.Dendro) obj;
+ } //-- org.vamsas.objects.core.Dendro removeDendro(int)
/**
* Method removeSequenceSet
} //-- org.vamsas.objects.core.SequenceSet removeSequenceSet(int)
/**
- * Method removeTree
+ * Method setDendro
*
*
*
* @param index
- * @return String
+ * @param vDendro
+ */
+ public void setDendro(int index, org.vamsas.objects.core.Dendro vDendro)
+ throws java.lang.IndexOutOfBoundsException
+ {
+ //-- check bounds for index
+ if ((index < 0) || (index > _dendroList.size())) {
+ throw new IndexOutOfBoundsException("setDendro: Index value '"+index+"' not in range [0.."+_dendroList.size()+ "]");
+ }
+ _dendroList.setElementAt(vDendro, index);
+ } //-- void setDendro(int, org.vamsas.objects.core.Dendro)
+
+ /**
+ * Method setDendro
+ *
+ *
+ *
+ * @param dendroArray
+ */
+ public void setDendro(org.vamsas.objects.core.Dendro[] dendroArray)
+ {
+ //-- copy array
+ _dendroList.removeAllElements();
+ for (int i = 0; i < dendroArray.length; i++) {
+ _dendroList.addElement(dendroArray[i]);
+ }
+ } //-- void setDendro(org.vamsas.objects.core.Dendro)
+
+ /**
+ * Sets the value of field 'id'.
+ *
+ * @param id the value of field 'id'.
*/
- public java.lang.String removeTree(int index)
+ public void setId(java.lang.String id)
{
- java.lang.Object obj = _treeList.elementAt(index);
- _treeList.removeElementAt(index);
- return (String)obj;
- } //-- java.lang.String removeTree(int)
+ this._id = id;
+ } //-- void setId(java.lang.String)
/**
* Method setSequenceSet
} //-- void setSequenceSet(org.vamsas.objects.core.SequenceSet)
/**
- * Method setTree
- *
- *
- *
- * @param index
- * @param vTree
- */
- public void setTree(int index, java.lang.String vTree)
- throws java.lang.IndexOutOfBoundsException
- {
- //-- check bounds for index
- if ((index < 0) || (index > _treeList.size())) {
- throw new IndexOutOfBoundsException("setTree: Index value '"+index+"' not in range [0.."+_treeList.size()+ "]");
- }
- _treeList.setElementAt(vTree, index);
- } //-- void setTree(int, java.lang.String)
-
- /**
- * Method setTree
- *
- *
- *
- * @param treeArray
- */
- public void setTree(java.lang.String[] treeArray)
- {
- //-- copy array
- _treeList.removeAllElements();
- for (int i = 0; i < treeArray.length; i++) {
- _treeList.addElement(treeArray[i]);
- }
- } //-- void setTree(java.lang.String)
-
- /**
* Method unmarshal
*
*
git://source.jalview.org / vamsas.git / blobdiff