refactored org to uk
[vamsas.git] / src / uk / ac / vamsas / objects / core / RangeAnnotationDescriptor.java
diff --git a/src/uk/ac/vamsas/objects/core/RangeAnnotationDescriptor.java b/src/uk/ac/vamsas/objects/core/RangeAnnotationDescriptor.java
new file mode 100644 (file)
index 0000000..23a6a83
--- /dev/null
@@ -0,0 +1,578 @@
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package uk.ac.vamsas.objects.core;\r
+\r
+  //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import org.exolab.castor.mapping.AccessMode;\r
+import org.exolab.castor.xml.TypeValidator;\r
+import org.exolab.castor.xml.XMLFieldDescriptor;\r
+import org.exolab.castor.xml.validators.*;\r
+\r
+/**\r
+ * Class RangeAnnotationDescriptor.\r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public class RangeAnnotationDescriptor extends uk.ac.vamsas.objects.core.RangeTypeDescriptor {\r
+\r
+\r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     * Field nsPrefix\r
+     */\r
+    private java.lang.String nsPrefix;\r
+\r
+    /**\r
+     * Field nsURI\r
+     */\r
+    private java.lang.String nsURI;\r
+\r
+    /**\r
+     * Field xmlName\r
+     */\r
+    private java.lang.String xmlName;\r
+\r
+    /**\r
+     * Field identity\r
+     */\r
+    private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
+\r
+\r
+      //----------------/\r
+     //- Constructors -/\r
+    //----------------/\r
+\r
+    public RangeAnnotationDescriptor() \r
+     {\r
+        super();\r
+        setExtendsWithoutFlatten(new uk.ac.vamsas.objects.core.RangeTypeDescriptor());\r
+        nsURI = "http://www.vamsas.org";\r
+        xmlName = "rangeAnnotation";\r
+        \r
+        //-- set grouping compositor\r
+        setCompositorAsSequence();\r
+        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
+        org.exolab.castor.mapping.FieldHandler             handler        = null;\r
+        org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
+        //-- initialize attribute descriptors\r
+        \r
+        //-- _id\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
+        this.identity = desc;\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getId();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.setId( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return new java.lang.String();\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _id\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _modifiable\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_modifiable", "modifiable", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getModifiable();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.setModifiable( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _modifiable\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _group\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_group", "group", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getGroup();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.setGroup( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _group\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _type\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_type", "type", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getType();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.setType( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setRequired(true);\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _type\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(1);\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- initialize element descriptors\r
+        \r
+        //-- _label\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element);\r
+        desc.setImmutable(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getLabel();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.setLabel( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("http://www.vamsas.org");\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _label\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _description\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);\r
+        desc.setImmutable(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getDescription();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.setDescription( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("http://www.vamsas.org");\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _description\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _status\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_status", "status", org.exolab.castor.xml.NodeType.Element);\r
+        desc.setImmutable(true);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getStatus();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.setStatus( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("http://www.vamsas.org");\r
+        desc.setMultivalued(false);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _status\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _annotationElementList\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getAnnotationElement();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.addAnnotationElement( (uk.ac.vamsas.objects.core.AnnotationElement) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return new uk.ac.vamsas.objects.core.AnnotationElement();\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("http://www.vamsas.org");\r
+        desc.setMultivalued(true);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _annotationElementList\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(0);\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _scoreList\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Score.class, "_scoreList", "score", org.exolab.castor.xml.NodeType.Element);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getScore();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.addScore( (uk.ac.vamsas.objects.core.Score) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return new uk.ac.vamsas.objects.core.Score();\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("http://www.vamsas.org");\r
+        desc.setMultivalued(true);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _scoreList\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(0);\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _linkList\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Link.class, "_linkList", "link", org.exolab.castor.xml.NodeType.Element);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getLink();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.addLink( (uk.ac.vamsas.objects.core.Link) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return new uk.ac.vamsas.objects.core.Link();\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("http://www.vamsas.org");\r
+        desc.setMultivalued(true);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _linkList\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(0);\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+        //-- _propertyList\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(uk.ac.vamsas.objects.core.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element);\r
+        handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                RangeAnnotation target = (RangeAnnotation) object;\r
+                return target.getProperty();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    RangeAnnotation target = (RangeAnnotation) object;\r
+                    target.addProperty( (uk.ac.vamsas.objects.core.Property) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return new uk.ac.vamsas.objects.core.Property();\r
+            }\r
+        };\r
+        desc.setHandler(handler);\r
+        desc.setNameSpaceURI("http://www.vamsas.org");\r
+        desc.setMultivalued(true);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _propertyList\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        fieldValidator.setMinOccurs(0);\r
+        { //-- local scope\r
+        }\r
+        desc.setValidator(fieldValidator);\r
+    } //-- uk.ac.vamsas.objects.core.RangeAnnotationDescriptor()\r
+\r
+\r
+      //-----------/\r
+     //- Methods -/\r
+    //-----------/\r
+\r
+    /**\r
+     * Method getAccessMode\r
+     * \r
+     * \r
+     * \r
+     * @return AccessMode\r
+     */\r
+    public org.exolab.castor.mapping.AccessMode getAccessMode()\r
+    {\r
+        return null;\r
+    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
+\r
+    /**\r
+     * Method getExtends\r
+     * \r
+     * \r
+     * \r
+     * @return ClassDescriptor\r
+     */\r
+    public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
+    {\r
+        return super.getExtends();\r
+    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
+\r
+    /**\r
+     * Method getIdentity\r
+     * \r
+     * \r
+     * \r
+     * @return FieldDescriptor\r
+     */\r
+    public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
+    {\r
+        if (identity == null)\r
+            return super.getIdentity();\r
+        return identity;\r
+    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
+\r
+    /**\r
+     * Method getJavaClass\r
+     * \r
+     * \r
+     * \r
+     * @return Class\r
+     */\r
+    public java.lang.Class getJavaClass()\r
+    {\r
+        return uk.ac.vamsas.objects.core.RangeAnnotation.class;\r
+    } //-- java.lang.Class getJavaClass() \r
+\r
+    /**\r
+     * Method getNameSpacePrefix\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getNameSpacePrefix()\r
+    {\r
+        return nsPrefix;\r
+    } //-- java.lang.String getNameSpacePrefix() \r
+\r
+    /**\r
+     * Method getNameSpaceURI\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getNameSpaceURI()\r
+    {\r
+        return nsURI;\r
+    } //-- java.lang.String getNameSpaceURI() \r
+\r
+    /**\r
+     * Method getValidator\r
+     * \r
+     * \r
+     * \r
+     * @return TypeValidator\r
+     */\r
+    public org.exolab.castor.xml.TypeValidator getValidator()\r
+    {\r
+        return this;\r
+    } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
+\r
+    /**\r
+     * Method getXMLName\r
+     * \r
+     * \r
+     * \r
+     * @return String\r
+     */\r
+    public java.lang.String getXMLName()\r
+    {\r
+        return xmlName;\r
+    } //-- java.lang.String getXMLName() \r
+\r
+}\r