refactoring org to uk

[vamsas.git] / src / uk / ac / vamsas / objects / utils / GlyphDictionary.java

diff --git a/src/uk/ac/vamsas/objects/utils/GlyphDictionary.java b/src/uk/ac/vamsas/objects/utils/GlyphDictionary.java
new file mode 100644 (file)
index 0000000..a49f4be
--- /dev/null
+++ b/src/uk/ac/vamsas/objects/utils/GlyphDictionary.java
@@ -0,0 +1,23 @@
+package uk.ac.vamsas.objects.utils;\r
+\r
+/**\r
+ * dict attribute values for glyph symbol sets found in uk.ac.vamsas.objects.core.AnnotationElement\r
+ * TODO: add validators and multilength symbols.\r
+ * @author JimP\r
+ *\r
+ */\r
+public class GlyphDictionary {\r
+  /**\r
+   * standard H, E, or C three state secondary structure assignment.\r
+   */\r
+  static final public String PROTEIN_SS_3STATE="aasecstr_3"; // HE, blank or C\r
+  /**\r
+   * default glyph type attribute indicates a UTF8 character\r
+   */\r
+  static final public String DEFAULT="utf8";\r
+  /**\r
+   * kyte and doolittle hydrophobicity\r
+   * TODO: specify this glyph set.\r
+   */\r
+  static final public String PROTEIN_HD_HYDRO="kd_hydrophobicity";\r
+}\r