X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fjvlfiles.html;fp=help%2Fhelp%2Fhtml%2Ffeatures%2Fjvlfiles.html;h=8661860792c5bbb4c66ed8d89ce1149f41705e56;hb=4b1c279987cdfe6ebdb894059cbc29d24d804e9d;hp=0000000000000000000000000000000000000000;hpb=948c990b3de3f97bcc6d08cfa565b1350a9f7513;p=jalview.git diff --git a/help/help/html/features/jvlfiles.html b/help/help/html/features/jvlfiles.html new file mode 100644 index 0000000..8661860 --- /dev/null +++ b/help/help/html/features/jvlfiles.html @@ -0,0 +1,70 @@ + + +JVL - Jalview Launch Files + +

+ Jalview Launch Files - JVL +

+

Files with a '.jvl' (or .JVL) extension can be opened by the + Jalview desktop application, and allow you to:

+ +

+ Some example JVL files are given below - copy and paste them into a + text editor and save them as a file with the extension '.jvl'. To + test, open your saved .jvl file via the OSX File Chooser or Windows + file explorer, or pass it to Jalview via the command line +

+

+ Passing command line arguments + 

+# Jalview Launch File
+# Please install the Jalview Desktop from 
+# http://www.jalview.org/getdown/release
+# and then try to open this file again
+jalview.apparg=-open
+jalview.apparg=http://www.jalview.org/examples/jpred_msa.fasta
+jalview.apparg=-annotations
+jalview.apparg=http://www.jalview.org/examples/jpred_msa.seq.concise
+jalview.apparg=-colour
+jalview.apparg=Clustal
+
+

+ Launching a different version of Jalview + 

+# Jalview Launch File
+# Please install the Jalview Desktop from 
+# http://www.jalview.org/getdown/release
+# and then try to open this file again
+appbase=http://www.jalview.org/old/v2_10_5/
+
+ For security, the Jalview application will only allow + appbase URLs from www.jalview.org, or your local file system. + +