X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=schemas%2Fvamsas.xsd;fp=schemas%2Fvamsas.xsd;h=c4a5d3e41a0e7369e3d5b89fa4405967f0751dd5;hb=7a48066cfd16ea943eb3dfcc8b2fe353d33ae15a;hp=fedbae3fc4c2819fce08013443252d9cfcab9c33;hpb=cf3e8343ced61a995515cb96e2c638f26dc813b9;p=jalview.git

diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index fedbae3..c4a5d3e 100755
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -269,6 +269,7 @@
 					</xs:complexType>
 				</xs:element>
 				<xs:element ref="vamsas:AlcodonFrame" minOccurs="0" maxOccurs="unbounded"/>
+				<xs:element name="Matrices" type="vamsas:MatrixType" minOccurs="0" maxOccurs="unbounded"/>
 			</xs:sequence>
 			<xs:attribute name="gapChar" type="xs:string" use="required"/>
 			<xs:attribute name="datasetId" type="xs:string" use="optional">
@@ -349,9 +350,34 @@
 			use="optional" />
 		<xs:attribute name="cutHeight" type="xs:double"
 			use="optional" />
-		<xs:attribute name="id" type="xs:string" use="optional" />
+		<xs:attribute name="id" type="xs:string" use="required" />
 
 	</xs:complexType>
+	<xs:complexType name="MapOnAMatrixType">
+		<xs:sequence>
+			<xs:element name="property" type="vamsas:property"
+				minOccurs="0" maxOccurs="unbounded" />
+			<xs:element name="mapping" type="vamsas:mapListType"
+				minOccurs="0" maxOccurs="1">
+				<xs:annotation>
+					<xs:documentation>mapping from the matrix row and column positions
+						to
+						associated reference frame
+					</xs:documentation>
+				</xs:annotation>
+			</xs:element>
+		</xs:sequence>
+	
+		<xs:attribute name="matrix" type="xs:string"
+			use="required">
+	
+			<xs:annotation>
+				<xs:documentation>reference to the matrix type this Map refers to
+				</xs:documentation>
+			</xs:annotation>
+		</xs:attribute>
+		<xs:attribute name="id" type="xs:string" use="optional" />
+	</xs:complexType>
 	<xs:complexType name="property">
 		<xs:attribute name="name" type="xs:string" />
 		<xs:attribute name="value" type="xs:string" />