X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=sources%2Falscript%2Fexamples%2Fdemo%2Fipns.blc;fp=sources%2Falscript%2Fexamples%2Fdemo%2Fipns.blc;h=9b73e929577adced470af12bc8d05cfb0aedff65;hb=4a806b607a11fc8a5296b11d5b863bbf8a448808;hp=0000000000000000000000000000000000000000;hpb=443c228bf0712d71e7fa34b5a2dc4b2b2e79f13f;p=jpred.git

diff --git a/sources/alscript/examples/demo/ipns.blc b/sources/alscript/examples/demo/ipns.blc
new file mode 100644
index 0000000..9b73e92
--- /dev/null
+++ b/sources/alscript/examples/demo/ipns.blc
@@ -0,0 +1,438 @@
+
+Conversion of CLUSTAL NBRF PIR file to AMPS BLOCKFILE format
+clus2blc:  Geoffrey J. Barton (1992)
+
+>P1;3_LYCES 3_LYCES     418 bp    PROT                0 JAN 1900, 418 bases, 1CE32436 checksum.
+>P1;U04434 U04434     428 bp    PROT                0 JAN 1900, 428 bases, A5C97FB7 checksum.
+>P1;HY6H_HYONI HY6H_HYONI     406 bp    PROT                0 JAN 1900, 406 bases, DF93DD1E checksum.
+>P1;S67953 S67953     400 bp    PROT                0 JAN 1900, 400 bases, 1276A781 checksum.
+>P1;X73314 X73314     428 bp    PROT                0 JAN 1900, 428 bases, 860E176 checksum.
+>P1;CEFE_STRCL CEFE_STRCL     402 bp    PROT                0 JAN 1900, 402 bases, 97CFEE75 checksum.
+>P1;EXPA_CEPAC EXPA_CEPAC     422 bp    PROT                0 JAN 1900, 422 bases, AE896850 checksum.
+>P1;IPNS_EMENI IPNS_EMENI     403 bp    PROT                0 JAN 1900, 403 bases, 4DADFBBB checksum.
+* iteration 1
+    M   
+    A   
+    L   
+    N   
+   MG   
+   KK   
+   TV   
+ M AA   
+ A QT   
+ P GE   
+ V VS   
+ S SA   
+ I AP   
+ S TS   
+ A LN   
+ V TL   
+ P MN   
+ F EE   
+ LAVE   
+ PTAM   
+ TFRK   
+ AVVG   
+ ASQE   
+ ENAY   
+ GWIR   
+ ESAP   
+ TTSP   
+ NKLF   
+ VSSG   
+ RVKG   
+ ASCS   
+ SEMD   
+ FSDE   
+ VFTS   
+ RIIK   
+ EAPV   
+ EPSP   
+ DLEE   
+ EQYD   
+ RKIF   
+ PRRI   
+ KASW   
+ VEES   
+ PKNE  M
+ HDEK  G
+ DVQF  S
+ RPPE  V
+ FVAA  S
+MSGASDTK
+EDNTETSA
+NEDTLTKN
+FVVLLVVV
+PPPHPPPP
+IVIGVTVK
+IVIVLFFI
+NSDVDSRD
+LLLLVLLV
+    P   
+   QT   
+EEQVIADS
+KGQPDEDP
+LIHVLLLL
+ND IE  F
+ G DK  G
+   LF  D
+   RM  D
+    S   
+    G   
+    D   
+GP DK  Q
+DR PS  A
+ER DYQKA
+RRHEVQSK
+AAHNEGGM
+NELKELKR
+TILMAHVV
+MRVVTQLA
+EGQKRDTQ
+MRQLLEEQ
+IVIIVFLI
+KATADRAD
+DAKDEREA
+AAAAACAA
+CCCSCLVS
+EEQKRRTR
+NDDEQDTD
+WWFWHKKT
+GGGGGGGG
+FILIILIF
+FFFFFFFF
+EQQQFYYY
+LVVLVLLA
+VVIIVTTV
+NDNNNDEN
+HHHHHCSH
+GGGGGGGG
+IVFIVLLI
+PDPPDTV 
+HAEDIDD 
+EAEEETD 
+VLLAMEDN
+MVMIMLHV
+DALAGKTQ
+TDEDRSSR
+VMTLVAAL
+EAMQHKRS
+KREKDDEQ
+MLVVCLTK
+TACGMVCT
+KRKKNIVK
+GDEEEDDE
+HFFFFFFF
+YFFFFFFH
+KAAETEKM
+KLLHMHNS
+CPPVPGGI
+MPAPLSST
+EEEQDEEP
+QDEEVAEE
+RKKEKEEE
+FLEKQKKK
+KRKERRRW
+EFFLAAAD
+LDKIKVVL
+VMPARTTA
+ASKKKSLI
+SGGTVPAR
+KGEPGVDA
+  A    Y
+  A    N
+  K    K
+  F    E
+  E    H
+  LG   Q
+  PS PRD
+  LN TNQ
+ KEDEMAV
+ KQISRRR
+ GKEYRRA
+GGAGGGGG
+LFKYYFFY
+EILGTTSY
+AVYTNGAL
+ SVSSLLS
+ SELFEEI
+  G FSWP
+  E GEEG
+    RSSK
+     TTK
+     AAA
+    FQVV
+VHQQAIVE
+QLLKSTTS
+AQSENNEF
+EGNVLTTC
+VEEEPGGY
+TAEGWSKL
+DVFKKYYN
+LQLKESSP
+DDYGTDDN
+WWWWFYYF
+ERKVSSST
+SEDDLMTP
+TITHRCCD
+FVLLCYYH
+FTAFVSSP
+LYHHAMMR
+RFGKAGGI
+HSCIQTIQ
+LYHWNAGA
+ PPPSDGK
+ VLPSNNT
+PKDSA  P
+TAQAA  T
+SRDVH  H 
+NDLND  E 
+IYVYY  V 
+SSNRV  N 
+QRSYLLLV
+VWWWDFFW
+PPPPTPPP
+DDEKLSND
+LKKNGGRE
+DPPPPDGT
+    S  K
+    F  H
+EAAPS  P
+EAKSH  G
+YWYYHFFF
+RRRRGEEQ
+EAEEKRDD
+VVVAAIVF
+MVVNYWWA
+REAEQTQE
+DRKEEQDQ
+FYYYCYYY
+ASSGGFFY
+KEVKIDDW
+RQERARRD
+LLVMLQMV
+EMRRNYYF
+KAKEETGG
+LLLVLAAL
+AATVGSAS
+ECMDTRKS
+ERRRKADA
+LLMIIVVL
+LLLFVAAL
+DGDKERRK
+LVYSLEAG
+LLILLVVY
+CSCSGLLA
+EEELLRNL
+NAGGSASA
+LMLLLTVL
+GGGGGGGG
+LLLLITAK
+EDKESEPE
+KTLGRPLE
+GEGHEDAN
+YAYEY  F
+LLFMF  F
+KADIKGGA
+NRNENGER
+AAEAFVDH
+FCLA   F
+YVSG   K
+GD    IP
+     EDD
+     ADD
+S  GFFFT
+K  DELVL
+G  EDDEA
+PMQINCCS
+NDIVDEDV
+FQQYSPPV
+GKMLILLL
+TVMLLLLI
+KVLKRRRR
+VVTILFLY
+SNNNNRRP
+NFYYYYYY
+YYYYYFFL
+PPPPPPPD
+PRPPTQEP
+CCCCCVVY
+PPPPDPPP
+KQDRKEEE
+PPPPPHDA
+DDSDERRA
+LLSLVSVI
+     AAK
+       T
+       A
+       A
+     EED
+     EEG
+     QET
+ITTAVPPK
+KLLLLLLL
+GGGGGRRS
+LLSVTMMF
+RKGVGAGE
+ARGAPPPW
+HHHHHHHH
+TTYTTYYE
+DDDDDDDD
+APGMPLLV
+GGNSTSSS
+GTLYSMTL
+IIIIVVII
+ITTTTTTT
+LLLIILLV
+LLLLLIVL
+FLQVHQHY
+QQQPQQQQ
+DDDNDTTS
+DL EPPAN
+K    CCV
+VVLVVAAQ
+SGPQSNNN
+GGGGGGG 
+     FF 
+     VV 
+     SS 
+LLLLLLLL
+QQQQQQQQ
+LAQVVACV
+LTLFCEEE
+KRIKSVVT
+DDVDNGDA
+EGKGDGGA
+ GD     
+ RA     
+QTTHQAEG
+WWWWWFFY
+IIIYYTVQ
+DTADSDDD
+VVVVILLI
+PQQKPPPE
+PPPYPYTA
+MVIINRLD
+REPPPPPD
+HGTNEDGT
+SAAAAAAG
+IFFLFVMY
+VVVIVLVL
+VVVVIVVI
+NNNHNFFN
+LLLIICCC
+GGGGGGGG
+DDLDDAAS
+QHTQTIVY
+LGLVFAGM
+EHKETTTA
+VLVISLLH
+ILILLVAL
+TSTSTTTT
+NNNNNGGN
+GGEGGGGN
+KRKKIQKY
+YFFYYVVY
+KKEKKKKK
+SNGSGAAA
+VASVCPPP
+LDIYIRKI
+HHHHHHHH
+RQRRRHRR
+VAVTAVVV
+IVVTVAKK
+AVTVVAS 
+     PP 
+     RG 
+     RR 
+     DD 
+QNDNNQQ 
+TSPKSIRW
+DETDMAVV
+GCRKNGGN
+TSDTASSA
+     SSE
+RRRRRRRR
+MLVMKTTQ
+SSSSSSSS
+LIIWLSSL
+AAAPAVVP
+STTVFFFF
+FFLFFFFF
+YQILLLLV
+NNGECRRN
+PPPPPPPL
+GADPSNKG
+SPYSHAPY
+DDSEDDDD
+AACHKFFS
+VTTEVTSV
+IVIVVFFI
+YYEGRSND
+PPPPAVVP
+ALAIPPQF
+KAKPELQD
+T EKEASP
+LVLLLRRR
+VRLLVEEE 
+EDNSECWP 
+KGQEKGGN
+EEDASFFG
+AANNPDNK
+EPPPPVVS
+EIP  SR 
+ LL  LI 
+SDY     
+THK     
+QPPPR   
+VIYKKDPD
+YTSFYGSR
+PFYKPEEE
+KASTDTRP
+FEEKYATL
+VMFKKTTS
+FYAYWFFY
+DRDKPQRG
+DRIDMDED
+YKYYLWWY
+MMLVLILL
+KASYEGGQ
+LRDCMGGN
+YDKKTNNG
+AISLQYYL
+GEDNKVVV
+LLYKRNNS
+KADLYIML
+FRSPRRRI
+QLGQPRRN
+AKV DTDK
+KKK CSKN
+EQP NKPG
+PAY TAAQ
+RKK L AT
+FAI E A 
+EDN A E 
+AKV F A 
+MK  K A 
+KQ  T V 
+AQ  W P 
+MQ  V A 
+EQ  Q A 
+SS  E A 
+DA  G P 
+PN  K V 
+IK  A S 
+AE  L T 
+SF  D A 
+AA  T A 
+ D  G P 
+ S  S I 
+ K  T A 
+ P  I T 
+ L  T   
+ D  A   
+ A  P   
+ I  S   
+ F  A   
+ A      
+*