X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=sources%2Fpairwise%2FPairwise%2FMakefile.old;fp=sources%2Fpairwise%2FPairwise%2FMakefile.old;h=e97a9f188965f5d6586efdac91582cc4f8099630;hb=9aa768067094f24f46f273077f867348e6143711;hp=0000000000000000000000000000000000000000;hpb=eb3001dc41bf6cd46e20fd13fe3efbe9dedf6013;p=jpred.git diff --git a/sources/pairwise/Pairwise/Makefile.old b/sources/pairwise/Pairwise/Makefile.old new file mode 100644 index 0000000..e97a9f1 --- /dev/null +++ b/sources/pairwise/Pairwise/Makefile.old @@ -0,0 +1,836 @@ +# This Makefile is for the Pairwise extension to perl. +# +# It was generated automatically by MakeMaker version +# 6.03 (Revision: 1.63) from the contents of +# Makefile.PL. Don't edit this file, edit Makefile.PL instead. +# +# ANY CHANGES MADE HERE WILL BE LOST! +# +# MakeMaker ARGV: () +# +# MakeMaker Parameters: + +# ABSTRACT_FROM => q[Pairwise.pm] +# AUTHOR => q[Jonathan Barber ] +# DEFINE => q[] +# INC => q[-I.] +# LIBS => [q[]] +# NAME => q[Pairwise] +# PREREQ_PM => { } +# VERSION_FROM => q[Pairwise.pm] + +# --- MakeMaker post_initialize section: + + +# --- MakeMaker const_config section: + +# These definitions are from config.sh (via /usr/lib/perl/5.8.0/Config.pm) + +# They may have been overridden via Makefile.PL or on the command line +AR = ar +CC = cc +CCCDLFLAGS = -fPIC +CCDLFLAGS = -rdynamic +DLEXT = so +DLSRC = dl_dlopen.xs +LD = cc +LDDLFLAGS = -shared -L/usr/local/lib +LDFLAGS = -L/usr/local/lib +LIBC = /lib/libc-2.3.1.so +LIB_EXT = .a +OBJ_EXT = .o +OSNAME = linux +OSVERS = 2.4.19 +RANLIB = : +SO = so +EXE_EXT = +FULL_AR = /usr/bin/ar + + +# --- MakeMaker constants section: +AR_STATIC_ARGS = cr +NAME = Pairwise +DISTNAME = Pairwise +NAME_SYM = Pairwise +VERSION = 0.01 +VERSION_SYM = 0_01 +XS_VERSION = 0.01 +INST_ARCHLIB = blib/arch +INST_SCRIPT = blib/script +INST_BIN = blib/bin +INST_LIB = blib/lib +INSTALLDIRS = site +PREFIX = /usr +SITEPREFIX = $(PREFIX)/local +VENDORPREFIX = $(PREFIX) +INSTALLPRIVLIB = $(PREFIX)/share/perl/5.8.0 +INSTALLSITELIB = $(SITEPREFIX)/share/perl/5.8.0 +INSTALLVENDORLIB = $(VENDORPREFIX)/share/perl5 +INSTALLARCHLIB = $(PREFIX)/lib/perl/5.8.0 +INSTALLSITEARCH = $(SITEPREFIX)/lib/perl/5.8.0 +INSTALLVENDORARCH = $(VENDORPREFIX)/lib/perl5 +INSTALLBIN = $(PREFIX)/bin +INSTALLSITEBIN = $(SITEPREFIX)/bin +INSTALLVENDORBIN = $(VENDORPREFIX)/bin +INSTALLSCRIPT = $(PREFIX)/bin +PERL_LIB = /usr/share/perl/5.8.0 +PERL_ARCHLIB = /usr/lib/perl/5.8.0 +SITELIBEXP = /usr/local/share/perl/5.8.0 +SITEARCHEXP = /usr/local/lib/perl/5.8.0 +LIBPERL_A = libperl.a +FIRST_MAKEFILE = Makefile +MAKE_APERL_FILE = Makefile.aperl +PERLMAINCC = $(CC) +PERL_INC = /usr/lib/perl/5.8.0/CORE +PERL = /usr/bin/perl +FULLPERL = /usr/bin/perl +PERLRUN = $(PERL) +FULLPERLRUN = $(FULLPERL) +PERLRUNINST = $(PERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)" +FULLPERLRUNINST = $(FULLPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)" +ABSPERL = $(PERL) +ABSPERLRUN = $(ABSPERL) +ABSPERLRUNINST = $(ABSPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)" +FULL_AR = /usr/bin/ar +PERL_CORE = 0 +NOOP = $(SHELL) -c true +NOECHO = @ + +VERSION_MACRO = VERSION +DEFINE_VERSION = -D$(VERSION_MACRO)=\"$(VERSION)\" +XS_VERSION_MACRO = XS_VERSION +XS_DEFINE_VERSION = -D$(XS_VERSION_MACRO)=\"$(XS_VERSION)\" +PERL_MALLOC_DEF = -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc + +MAKEMAKER = /usr/share/perl/5.8.0/ExtUtils/MakeMaker.pm +MM_VERSION = 6.03 + +# FULLEXT = Pathname for extension directory (eg Foo/Bar/Oracle). +# BASEEXT = Basename part of FULLEXT. May be just equal FULLEXT. (eg Oracle) +# PARENT_NAME = NAME without BASEEXT and no trailing :: (eg Foo::Bar) +# DLBASE = Basename part of dynamic library. May be just equal BASEEXT. +FULLEXT = Pairwise +BASEEXT = Pairwise +PARENT_NAME = +DLBASE = $(BASEEXT) +VERSION_FROM = Pairwise.pm +INC = -I. +DEFINE = +OBJECT = $(BASEEXT)$(OBJ_EXT) +LDFROM = $(OBJECT) +LINKTYPE = dynamic + +# Handy lists of source code files: +XS_FILES= Pairwise.xs +C_FILES = Pairwise.c +O_FILES = Pairwise.o +H_FILES = ppport.h +MAN1PODS = +MAN3PODS = Pairwise.pm +INST_MAN1DIR = blib/man1 +MAN1EXT = 1p +INSTALLMAN1DIR = $(PREFIX)/share/man/man1 +INSTALLSITEMAN1DIR = $(SITEPREFIX)/man/man1 +INSTALLVENDORMAN1DIR = $(VENDORPREFIX)/share/man/man1 +INST_MAN3DIR = blib/man3 +MAN3EXT = 3pm +INSTALLMAN3DIR = $(PREFIX)/share/man/man3 +INSTALLSITEMAN3DIR = $(SITEPREFIX)/man/man3 +INSTALLVENDORMAN3DIR = $(VENDORPREFIX)/share/man/man3 +PERM_RW = 644 +PERM_RWX = 755 + +# work around a famous dec-osf make(1) feature(?): +makemakerdflt: all + +.SUFFIXES: .xs .c .C .cpp .i .s .cxx .cc $(OBJ_EXT) + +# Nick wanted to get rid of .PRECIOUS. I don't remember why. I seem to recall, that +# some make implementations will delete the Makefile when we rebuild it. Because +# we call false(1) when we rebuild it. So make(1) is not completely wrong when it +# does so. Our milage may vary. +# .PRECIOUS: Makefile # seems to be not necessary anymore + +.PHONY: all config static dynamic test linkext manifest + +# Where is the Config information that we are using/depend on +CONFIGDEP = $(PERL_ARCHLIB)/Config.pm $(PERL_INC)/config.h + +# Where to put things: +INST_LIBDIR = $(INST_LIB) +INST_ARCHLIBDIR = $(INST_ARCHLIB) + +INST_AUTODIR = $(INST_LIB)/auto/$(FULLEXT) +INST_ARCHAUTODIR = $(INST_ARCHLIB)/auto/$(FULLEXT) + +INST_STATIC = $(INST_ARCHAUTODIR)/$(BASEEXT)$(LIB_EXT) +INST_DYNAMIC = $(INST_ARCHAUTODIR)/$(DLBASE).$(DLEXT) +INST_BOOT = $(INST_ARCHAUTODIR)/$(BASEEXT).bs + +EXPORT_LIST = + +PERL_ARCHIVE = + +PERL_ARCHIVE_AFTER = + +TO_INST_PM = Pairwise.pm \ + foo.pl + +PM_TO_BLIB = foo.pl \ + blib/lib/foo.pl \ + Pairwise.pm \ + blib/lib/Pairwise.pm + + +# --- MakeMaker tool_autosplit section: +# Usage: $(AUTOSPLITFILE) FileToSplit AutoDirToSplitInto +AUTOSPLITFILE = $(PERLRUN) -e 'use AutoSplit; autosplit($$ARGV[0], $$ARGV[1], 0, 1, 1) ;' + + + +# --- MakeMaker tool_xsubpp section: + +XSUBPPDIR = /usr/share/perl/5.8.0/ExtUtils +XSUBPP = $(XSUBPPDIR)/xsubpp +XSPROTOARG = +XSUBPPDEPS = $(XSUBPPDIR)/typemap typemap $(XSUBPP) +XSUBPPARGS = -typemap $(XSUBPPDIR)/typemap -typemap typemap +XSUBPP_EXTRA_ARGS = + + +# --- MakeMaker tools_other section: + +SHELL = /bin/sh +CHMOD = chmod +CP = cp +LD = cc +MV = mv +NOOP = $(SHELL) -c true +RM_F = rm -f +RM_RF = rm -rf +TEST_F = test -f +TOUCH = touch +UMASK_NULL = umask 0 +DEV_NULL = > /dev/null 2>&1 + +# The following is a portable way to say mkdir -p +# To see which directories are created, change the if 0 to if 1 +MKPATH = $(PERLRUN) "-MExtUtils::Command" -e mkpath + +# This helps us to minimize the effect of the .exists files A yet +# better solution would be to have a stable file in the perl +# distribution with a timestamp of zero. But this solution doesn't +# need any changes to the core distribution and works with older perls +EQUALIZE_TIMESTAMP = $(PERLRUN) "-MExtUtils::Command" -e eqtime + +# Here we warn users that an old packlist file was found somewhere, +# and that they should call some uninstall routine +WARN_IF_OLD_PACKLIST = $(PERL) -we 'exit unless -f $$ARGV[0];' \ +-e 'print "WARNING: I have found an old package in\n";' \ +-e 'print "\t$$ARGV[0].\n";' \ +-e 'print "Please make sure the two installations are not conflicting\n";' + +UNINST=0 +VERBINST=0 + +MOD_INSTALL = $(PERL) "-I$(INST_LIB)" "-I$(PERL_LIB)" "-MExtUtils::Install" \ +-e "install({@ARGV},'$(VERBINST)',0,'$(UNINST)');" + +DOC_INSTALL = $(PERL) -e '$$\="\n\n";' \ +-e 'print "=head2 ", scalar(localtime), ": C<", shift, ">", " L<", $$arg=shift, "|", $$arg, ">";' \ +-e 'print "=over 4";' \ +-e 'while (defined($$key = shift) and defined($$val = shift)){print "=item *";print "C<$$key: $$val>";}' \ +-e 'print "=back";' + +UNINSTALL = $(PERLRUN) "-MExtUtils::Install" \ +-e 'uninstall($$ARGV[0],1,1); print "\nUninstall is deprecated. Please check the";' \ +-e 'print " packlist above carefully.\n There may be errors. Remove the";' \ +-e 'print " appropriate files manually.\n Sorry for the inconveniences.\n"' + + +# --- MakeMaker dist section: +ZIPFLAGS = -r +TO_UNIX = @$(NOOP) +TAR = tar +POSTOP = @$(NOOP) +ZIP = zip +DIST_DEFAULT = tardist +CI = ci -u +SHAR = shar +COMPRESS = gzip --best +DIST_CP = best +PREOP = @$(NOOP) +TARFLAGS = cvf +DISTVNAME = $(DISTNAME)-$(VERSION) +SUFFIX = .gz +RCS_LABEL = rcs -Nv$(VERSION_SYM): -q + + +# --- MakeMaker macro section: + + +# --- MakeMaker depend section: + + +# --- MakeMaker cflags section: + +CCFLAGS = -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 +OPTIMIZE = -O3 +PERLTYPE = +MPOLLUTE = + + +# --- MakeMaker const_loadlibs section: + +# Pairwise might depend on some other libraries: +# See ExtUtils::Liblist for details +# +LD_RUN_PATH = + + +# --- MakeMaker const_cccmd section: +CCCMD = $(CC) -c $(PASTHRU_INC) $(INC) \ + $(CCFLAGS) $(OPTIMIZE) \ + $(PERLTYPE) $(MPOLLUTE) $(DEFINE_VERSION) \ + $(XS_DEFINE_VERSION) + +# --- MakeMaker post_constants section: + + +# --- MakeMaker pasthru section: + +PASTHRU = LIB="$(LIB)"\ + LIBPERL_A="$(LIBPERL_A)"\ + LINKTYPE="$(LINKTYPE)"\ + PREFIX="$(PREFIX)"\ + OPTIMIZE="$(OPTIMIZE)"\ + PASTHRU_DEFINE="$(PASTHRU_DEFINE)"\ + PASTHRU_INC="$(PASTHRU_INC)" + + +# --- MakeMaker c_o section: + +.c.i: + cc -E -c $(PASTHRU_INC) $(INC) \ + $(CCFLAGS) $(OPTIMIZE) \ + $(PERLTYPE) $(MPOLLUTE) $(DEFINE_VERSION) \ + $(XS_DEFINE_VERSION) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c > $*.i + +.c.s: + $(CCCMD) -S $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c + +.c$(OBJ_EXT): + $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c + +.C$(OBJ_EXT): + $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.C + +.cpp$(OBJ_EXT): + $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cpp + +.cxx$(OBJ_EXT): + $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cxx + +.cc$(OBJ_EXT): + $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cc + + +# --- MakeMaker xs_c section: + +.xs.c: + $(PERLRUN) $(XSUBPP) $(XSPROTOARG) $(XSUBPPARGS) $(XSUBPP_EXTRA_ARGS) $*.xs > $*.xsc && $(MV) $*.xsc $*.c + + +# --- MakeMaker xs_o section: + +.xs$(OBJ_EXT): + $(PERLRUN) $(XSUBPP) $(XSPROTOARG) $(XSUBPPARGS) $*.xs > $*.xsc && $(MV) $*.xsc $*.c + $(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c + + +# --- MakeMaker top_targets section: + +all :: pure_all manifypods + @$(NOOP) + +pure_all :: config pm_to_blib subdirs linkext + @$(NOOP) + +subdirs :: $(MYEXTLIB) + @$(NOOP) + +config :: Makefile $(INST_LIBDIR)/.exists + @$(NOOP) + +config :: $(INST_ARCHAUTODIR)/.exists + @$(NOOP) + +config :: $(INST_AUTODIR)/.exists + @$(NOOP) + +$(INST_AUTODIR)/.exists :: /usr/lib/perl/5.8.0/CORE/perl.h + @$(MKPATH) $(INST_AUTODIR) + @$(EQUALIZE_TIMESTAMP) /usr/lib/perl/5.8.0/CORE/perl.h $(INST_AUTODIR)/.exists + + -@$(CHMOD) $(PERM_RWX) $(INST_AUTODIR) + +$(INST_LIBDIR)/.exists :: /usr/lib/perl/5.8.0/CORE/perl.h + @$(MKPATH) $(INST_LIBDIR) + @$(EQUALIZE_TIMESTAMP) /usr/lib/perl/5.8.0/CORE/perl.h $(INST_LIBDIR)/.exists + + -@$(CHMOD) $(PERM_RWX) $(INST_LIBDIR) + +$(INST_ARCHAUTODIR)/.exists :: /usr/lib/perl/5.8.0/CORE/perl.h + @$(MKPATH) $(INST_ARCHAUTODIR) + @$(EQUALIZE_TIMESTAMP) /usr/lib/perl/5.8.0/CORE/perl.h $(INST_ARCHAUTODIR)/.exists + + -@$(CHMOD) $(PERM_RWX) $(INST_ARCHAUTODIR) + +config :: $(INST_MAN3DIR)/.exists + @$(NOOP) + + +$(INST_MAN3DIR)/.exists :: /usr/lib/perl/5.8.0/CORE/perl.h + @$(MKPATH) $(INST_MAN3DIR) + @$(EQUALIZE_TIMESTAMP) /usr/lib/perl/5.8.0/CORE/perl.h $(INST_MAN3DIR)/.exists + + -@$(CHMOD) $(PERM_RWX) $(INST_MAN3DIR) + +$(O_FILES): $(H_FILES) + +help: + perldoc ExtUtils::MakeMaker + + +# --- MakeMaker linkext section: + +linkext :: $(LINKTYPE) + @$(NOOP) + + +# --- MakeMaker dlsyms section: + + +# --- MakeMaker dynamic section: + +## $(INST_PM) has been moved to the all: target. +## It remains here for awhile to allow for old usage: "make dynamic" +#dynamic :: Makefile $(INST_DYNAMIC) $(INST_BOOT) $(INST_PM) +dynamic :: Makefile $(INST_DYNAMIC) $(INST_BOOT) + @$(NOOP) + + +# --- MakeMaker dynamic_bs section: + +BOOTSTRAP = Pairwise.bs + +# As Mkbootstrap might not write a file (if none is required) +# we use touch to prevent make continually trying to remake it. +# The DynaLoader only reads a non-empty file. +$(BOOTSTRAP): Makefile $(INST_ARCHAUTODIR)/.exists + @echo "Running Mkbootstrap for $(NAME) ($(BSLOADLIBS))" + @$(PERLRUN) \ + "-MExtUtils::Mkbootstrap" \ + -e "Mkbootstrap('$(BASEEXT)','$(BSLOADLIBS)');" + @$(TOUCH) $(BOOTSTRAP) + $(CHMOD) $(PERM_RW) $@ + +$(INST_BOOT): $(BOOTSTRAP) $(INST_ARCHAUTODIR)/.exists + @rm -rf $(INST_BOOT) + -cp $(BOOTSTRAP) $(INST_BOOT) + $(CHMOD) $(PERM_RW) $@ + + +# --- MakeMaker dynamic_lib section: + +# This section creates the dynamically loadable $(INST_DYNAMIC) +# from $(OBJECT) and possibly $(MYEXTLIB). +ARMAYBE = : +OTHERLDFLAGS = +INST_DYNAMIC_DEP = + +$(INST_DYNAMIC): $(OBJECT) $(MYEXTLIB) $(BOOTSTRAP) $(INST_ARCHAUTODIR)/.exists $(EXPORT_LIST) $(PERL_ARCHIVE) $(PERL_ARCHIVE_AFTER) $(INST_DYNAMIC_DEP) + $(RM_F) $@ + LD_RUN_PATH="$(LD_RUN_PATH)" $(LD) $(LDDLFLAGS) $(LDFROM) $(OTHERLDFLAGS) -o $@ $(MYEXTLIB) $(PERL_ARCHIVE) $(LDLOADLIBS) $(PERL_ARCHIVE_AFTER) $(EXPORT_LIST) + $(CHMOD) $(PERM_RWX) $@ + + +# --- MakeMaker static section: + +## $(INST_PM) has been moved to the all: target. +## It remains here for awhile to allow for old usage: "make static" +#static :: Makefile $(INST_STATIC) $(INST_PM) +static :: Makefile $(INST_STATIC) + @$(NOOP) + + +# --- MakeMaker static_lib section: + +$(INST_STATIC): $(OBJECT) $(MYEXTLIB) $(INST_ARCHAUTODIR)/.exists + $(RM_RF) $@ + $(FULL_AR) $(AR_STATIC_ARGS) $@ $(OBJECT) && $(RANLIB) $@ + $(CHMOD) $(PERM_RWX) $@ + @echo "$(EXTRALIBS)" > $(INST_ARCHAUTODIR)/extralibs.ld + + + +# --- MakeMaker manifypods section: +POD2MAN_EXE = /usr/bin/pod2man +POD2MAN = $(PERL) -we '%m=@ARGV;for (keys %m){' \ +-e 'next if -e $$m{$$_} && -M $$m{$$_} < -M $$_ && -M $$m{$$_} < -M "Makefile";' \ +-e 'print "Manifying $$m{$$_}\n";' \ +-e 'system(q[$(PERLRUN) $(POD2MAN_EXE) ].qq[$$_>$$m{$$_}])==0 or warn "Couldn\047t install $$m{$$_}\n";' \ +-e 'chmod(oct($(PERM_RW)), $$m{$$_}) or warn "chmod $(PERM_RW) $$m{$$_}: $$!\n";}' + +manifypods : pure_all Pairwise.pm + @$(POD2MAN) \ + Pairwise.pm \ + $(INST_MAN3DIR)/Pairwise.$(MAN3EXT) + +# --- MakeMaker processPL section: + + +# --- MakeMaker installbin section: + + +# --- MakeMaker subdirs section: + +# none + +# --- MakeMaker clean section: + +# Delete temporary files but do not touch installed files. We don't delete +# the Makefile here so a later make realclean still has a makefile to use. + +clean :: + -rm -rf Pairwise.c ./blib $(MAKE_APERL_FILE) $(INST_ARCHAUTODIR)/extralibs.all perlmain.c tmon.out mon.out so_locations pm_to_blib *$(OBJ_EXT) *$(LIB_EXT) perl.exe perl perl$(EXE_EXT) $(BOOTSTRAP) $(BASEEXT).bso $(BASEEXT).def lib$(BASEEXT).def $(BASEEXT).exp $(BASEEXT).x core core.*perl.*.? *perl.core + -mv Makefile Makefile.old $(DEV_NULL) + + +# --- MakeMaker realclean section: + +# Delete temporary files (via clean) and also delete installed files +realclean purge :: clean + rm -rf $(INST_AUTODIR) $(INST_ARCHAUTODIR) + rm -rf $(DISTVNAME) + rm -f $(INST_DYNAMIC) $(INST_BOOT) + rm -f $(INST_STATIC) + rm -f blib/lib/foo.pl blib/lib/Pairwise.pm + rm -rf Makefile Makefile.old + + +# --- MakeMaker dist_basics section: +distclean :: realclean distcheck + $(NOECHO) $(NOOP) + +distcheck : + $(PERLRUN) "-MExtUtils::Manifest=fullcheck" -e fullcheck + +skipcheck : + $(PERLRUN) "-MExtUtils::Manifest=skipcheck" -e skipcheck + +manifest : + $(PERLRUN) "-MExtUtils::Manifest=mkmanifest" -e mkmanifest + +veryclean : realclean + $(RM_F) *~ *.orig */*~ */*.orig + + + +# --- MakeMaker dist_core section: + +dist : $(DIST_DEFAULT) + @$(PERL) -le 'print "Warning: Makefile possibly out of date with $$vf" if ' \ + -e '-e ($$vf="$(VERSION_FROM)") and -M $$vf < -M "Makefile";' + +tardist : $(DISTVNAME).tar$(SUFFIX) + +zipdist : $(DISTVNAME).zip + +$(DISTVNAME).tar$(SUFFIX) : distdir + $(PREOP) + $(TO_UNIX) + $(TAR) $(TARFLAGS) $(DISTVNAME).tar $(DISTVNAME) + $(RM_RF) $(DISTVNAME) + $(COMPRESS) $(DISTVNAME).tar + $(POSTOP) + +$(DISTVNAME).zip : distdir + $(PREOP) + $(ZIP) $(ZIPFLAGS) $(DISTVNAME).zip $(DISTVNAME) + $(RM_RF) $(DISTVNAME) + $(POSTOP) + +uutardist : $(DISTVNAME).tar$(SUFFIX) + uuencode $(DISTVNAME).tar$(SUFFIX) \ + $(DISTVNAME).tar$(SUFFIX) > \ + $(DISTVNAME).tar$(SUFFIX)_uu + +shdist : distdir + $(PREOP) + $(SHAR) $(DISTVNAME) > $(DISTVNAME).shar + $(RM_RF) $(DISTVNAME) + $(POSTOP) + + +# --- MakeMaker dist_dir section: +distdir : + $(RM_RF) $(DISTVNAME) + $(PERLRUN) "-MExtUtils::Manifest=manicopy,maniread" \ + -e "manicopy(maniread(),'$(DISTVNAME)', '$(DIST_CP)');" + + + +# --- MakeMaker dist_test section: + +disttest : distdir + cd $(DISTVNAME) && $(ABSPERLRUN) Makefile.PL + cd $(DISTVNAME) && $(MAKE) $(PASTHRU) + cd $(DISTVNAME) && $(MAKE) test $(PASTHRU) + + +# --- MakeMaker dist_ci section: + +ci : + $(PERLRUN) "-MExtUtils::Manifest=maniread" \ + -e "@all = keys %{ maniread() };" \ + -e 'print("Executing $(CI) @all\n"); system("$(CI) @all");' \ + -e 'print("Executing $(RCS_LABEL) ...\n"); system("$(RCS_LABEL) @all");' + + +# --- MakeMaker install section: + +install :: all pure_install doc_install + +install_perl :: all pure_perl_install doc_perl_install + +install_site :: all pure_site_install doc_site_install + +install_vendor :: all pure_vendor_install doc_vendor_install + +pure_install :: pure_$(INSTALLDIRS)_install + +doc_install :: doc_$(INSTALLDIRS)_install + +pure__install : pure_site_install + @echo INSTALLDIRS not defined, defaulting to INSTALLDIRS=site + +doc__install : doc_site_install + @echo INSTALLDIRS not defined, defaulting to INSTALLDIRS=site + +pure_perl_install :: + @umask 022; $(MOD_INSTALL) \ + read $(PERL_ARCHLIB)/auto/$(FULLEXT)/.packlist \ + write $(INSTALLARCHLIB)/auto/$(FULLEXT)/.packlist \ + $(INST_LIB) $(INSTALLPRIVLIB) \ + $(INST_ARCHLIB) $(INSTALLARCHLIB) \ + $(INST_BIN) $(INSTALLBIN) \ + $(INST_SCRIPT) $(INSTALLSCRIPT) \ + $(INST_MAN1DIR) $(INSTALLMAN1DIR) \ + $(INST_MAN3DIR) $(INSTALLMAN3DIR) + @$(WARN_IF_OLD_PACKLIST) \ + $(SITEARCHEXP)/auto/$(FULLEXT) + + +pure_site_install :: + @umask 02; $(MOD_INSTALL) \ + read $(SITEARCHEXP)/auto/$(FULLEXT)/.packlist \ + write $(INSTALLSITEARCH)/auto/$(FULLEXT)/.packlist \ + $(INST_LIB) $(INSTALLSITELIB) \ + $(INST_ARCHLIB) $(INSTALLSITEARCH) \ + $(INST_BIN) $(INSTALLSITEBIN) \ + $(INST_SCRIPT) $(INSTALLSCRIPT) \ + $(INST_MAN1DIR) $(INSTALLSITEMAN1DIR) \ + $(INST_MAN3DIR) $(INSTALLSITEMAN3DIR) + @$(WARN_IF_OLD_PACKLIST) \ + $(PERL_ARCHLIB)/auto/$(FULLEXT) + +pure_vendor_install :: + @umask 022; $(MOD_INSTALL) \ + $(INST_LIB) $(INSTALLVENDORLIB) \ + $(INST_ARCHLIB) $(INSTALLVENDORARCH) \ + $(INST_BIN) $(INSTALLVENDORBIN) \ + $(INST_SCRIPT) $(INSTALLSCRIPT) \ + $(INST_MAN1DIR) $(INSTALLVENDORMAN1DIR) \ + $(INST_MAN3DIR) $(INSTALLVENDORMAN3DIR) + +doc_perl_install :: + @echo Appending installation info to $(INSTALLARCHLIB)/perllocal.pod + -@umask 022; $(MKPATH) $(INSTALLARCHLIB) + -@umask 022; $(DOC_INSTALL) \ + "Module" "$(NAME)" \ + "installed into" "$(INSTALLPRIVLIB)" \ + LINKTYPE "$(LINKTYPE)" \ + VERSION "$(VERSION)" \ + EXE_FILES "$(EXE_FILES)" \ + >> $(INSTALLARCHLIB)/perllocal.pod + +doc_site_install :: + @echo Appending installation info to $(INSTALLSITEARCH)/perllocal.pod + -@umask 02; $(MKPATH) $(INSTALLSITEARCH) + -@umask 02; $(DOC_INSTALL) \ + "Module" "$(NAME)" \ + "installed into" "$(INSTALLSITELIB)" \ + LINKTYPE "$(LINKTYPE)" \ + VERSION "$(VERSION)" \ + EXE_FILES "$(EXE_FILES)" \ + >> $(INSTALLSITEARCH)/perllocal.pod + +doc_vendor_install :: + + +uninstall :: uninstall_from_$(INSTALLDIRS)dirs + +uninstall_from_perldirs :: + @$(UNINSTALL) $(PERL_ARCHLIB)/auto/$(FULLEXT)/.packlist + +uninstall_from_sitedirs :: + @$(UNINSTALL) $(SITEARCHEXP)/auto/$(FULLEXT)/.packlist + + +# --- MakeMaker force section: +# Phony target to force checking subdirectories. +FORCE: + @$(NOOP) + + +# --- MakeMaker perldepend section: + +PERL_HDRS = \ + $(PERL_INC)/EXTERN.h \ + $(PERL_INC)/INTERN.h \ + $(PERL_INC)/XSUB.h \ + $(PERL_INC)/av.h \ + $(PERL_INC)/cc_runtime.h \ + $(PERL_INC)/config.h \ + $(PERL_INC)/cop.h \ + $(PERL_INC)/cv.h \ + $(PERL_INC)/dosish.h \ + $(PERL_INC)/embed.h \ + $(PERL_INC)/embedvar.h \ + $(PERL_INC)/fakethr.h \ + $(PERL_INC)/form.h \ + $(PERL_INC)/gv.h \ + $(PERL_INC)/handy.h \ + $(PERL_INC)/hv.h \ + $(PERL_INC)/intrpvar.h \ + $(PERL_INC)/iperlsys.h \ + $(PERL_INC)/keywords.h \ + $(PERL_INC)/mg.h \ + $(PERL_INC)/nostdio.h \ + $(PERL_INC)/op.h \ + $(PERL_INC)/opcode.h \ + $(PERL_INC)/opnames.h \ + $(PERL_INC)/patchlevel.h \ + $(PERL_INC)/perl.h \ + $(PERL_INC)/perlapi.h \ + $(PERL_INC)/perlio.h \ + $(PERL_INC)/perlsdio.h \ + $(PERL_INC)/perlsfio.h \ + $(PERL_INC)/perlvars.h \ + $(PERL_INC)/perly.h \ + $(PERL_INC)/pp.h \ + $(PERL_INC)/pp_proto.h \ + $(PERL_INC)/proto.h \ + $(PERL_INC)/regcomp.h \ + $(PERL_INC)/regexp.h \ + $(PERL_INC)/regnodes.h \ + $(PERL_INC)/scope.h \ + $(PERL_INC)/sv.h \ + $(PERL_INC)/thrdvar.h \ + $(PERL_INC)/thread.h \ + $(PERL_INC)/unixish.h \ + $(PERL_INC)/utf8.h \ + $(PERL_INC)/util.h \ + $(PERL_INC)/warnings.h + +$(OBJECT) : $(PERL_HDRS) + +Pairwise.c : $(XSUBPPDEPS) + + +# --- MakeMaker makefile section: + +$(OBJECT) : $(FIRST_MAKEFILE) + +# We take a very conservative approach here, but it\'s worth it. +# We move Makefile to Makefile.old here to avoid gnu make looping. +Makefile : Makefile.PL $(CONFIGDEP) + @echo "Makefile out-of-date with respect to $?" + @echo "Cleaning current config before rebuilding Makefile..." + -@$(RM_F) Makefile.old + -@$(MV) Makefile Makefile.old + -$(MAKE) -f Makefile.old clean $(DEV_NULL) || $(NOOP) + $(PERLRUN) Makefile.PL + @echo "==> Your Makefile has been rebuilt. <==" + @echo "==> Please rerun the make command. <==" + false + + + +# --- MakeMaker staticmake section: + +# --- MakeMaker makeaperl section --- +MAP_TARGET = perl +FULLPERL = /usr/bin/perl + +$(MAP_TARGET) :: static $(MAKE_APERL_FILE) + $(MAKE) -f $(MAKE_APERL_FILE) $@ + +$(MAKE_APERL_FILE) : $(FIRST_MAKEFILE) + @echo Writing \"$(MAKE_APERL_FILE)\" for this $(MAP_TARGET) + @$(PERLRUNINST) \ + Makefile.PL DIR= \ + MAKEFILE=$(MAKE_APERL_FILE) LINKTYPE=static \ + MAKEAPERL=1 NORECURS=1 CCCDLFLAGS= + + +# --- MakeMaker test section: + +TEST_VERBOSE=0 +TEST_TYPE=test_$(LINKTYPE) +TEST_FILE = test.pl +TEST_FILES = t/*.t +TESTDB_SW = -d + +testdb :: testdb_$(LINKTYPE) + +test :: $(TEST_TYPE) + +test_dynamic :: pure_all + PERL_DL_NONLAZY=1 $(FULLPERLRUN) "-MExtUtils::Command::MM" "-e" "test_harness($(TEST_VERBOSE), '$(INST_LIB)', '$(INST_ARCHLIB)')" $(TEST_FILES) + +testdb_dynamic :: pure_all + PERL_DL_NONLAZY=1 $(FULLPERLRUN) $(TESTDB_SW) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE) + +test_ : test_dynamic + +test_static :: pure_all $(MAP_TARGET) + PERL_DL_NONLAZY=1 ./$(MAP_TARGET) "-MExtUtils::Command::MM" "-e" "test_harness($(TEST_VERBOSE), '$(INST_LIB)', '$(INST_ARCHLIB)')" $(TEST_FILES) + +testdb_static :: pure_all $(MAP_TARGET) + PERL_DL_NONLAZY=1 ./$(MAP_TARGET) $(TESTDB_SW) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE) + + + +# --- MakeMaker ppd section: +# Creates a PPD (Perl Package Description) for a binary distribution. +ppd: + @$(PERL) -e "print qq{\n\t$(DISTNAME)\n\tPerl extension for doing pairwise comparisons of sequences\n\tJonathan Barber <jon\@compbio.dundee.ac.uk>\n}" > $(DISTNAME).ppd + @$(PERL) -e "print qq{\t\n}" >> $(DISTNAME).ppd + @$(PERL) -e "print qq{\t\t\n\t\t\n\t\t\n\t\n\n}" >> $(DISTNAME).ppd + +# --- MakeMaker pm_to_blib section: + +pm_to_blib: $(TO_INST_PM) + @$(PERLRUNINST) "-MExtUtils::Install" \ + -e "pm_to_blib({qw{foo.pl blib/lib/foo.pl Pairwise.pm blib/lib/Pairwise.pm}},'$(INST_LIB)/auto','$(PM_FILTER)')" + @$(TOUCH) $@ + +# --- MakeMaker selfdocument section: + + +# --- MakeMaker postamble section: + + +# End.