X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fio%2Fvamsas%2FDatasetsequence.java;fp=src%2Fjalview%2Fio%2Fvamsas%2FDatasetsequence.java;h=462f5af5e7d7178ac54fae815da9b7904dc4a81c;hb=9e2b4ccd9c95ffa75130bf808b0037ea6a1054ca;hp=9db7a8e1d430c7e060df9744bd1245889ff7fe4e;hpb=4dd40d33a5becefd51c31a426f2501b21029f82c;p=jalview.git

diff --git a/src/jalview/io/vamsas/Datasetsequence.java b/src/jalview/io/vamsas/Datasetsequence.java
index 9db7a8e..462f5af 100644
--- a/src/jalview/io/vamsas/Datasetsequence.java
+++ b/src/jalview/io/vamsas/Datasetsequence.java
@@ -79,7 +79,8 @@ public class Datasetsequence extends DatastoreItem
     SequenceI sequence = (SequenceI) jvobj;
     if (!sequence.getSequenceAsString().equals(sq.getSequence()))
     {
-      log.warn("Potential Client Error ! - mismatch of dataset sequence: and jalview internal dataset sequence.");
+      log.warn(
+              "Potential Client Error ! - mismatch of dataset sequence: and jalview internal dataset sequence.");
     }
     else
     {
@@ -140,8 +141,8 @@ public class Datasetsequence extends DatastoreItem
       {
         modified |= new jalview.io.vamsas.Sequencefeature(datastore,
                 (jalview.datamodel.SequenceFeature) sq
-                        .getSequenceFeatures()[sf], dataset,
-                (Sequence) vobj).docWasUpdated();
+                        .getSequenceFeatures()[sf],
+                dataset, (Sequence) vobj).docWasUpdated();
       }
     }
     return modified;
@@ -183,7 +184,7 @@ public class Datasetsequence extends DatastoreItem
       for (int db = 0; db < entries.length; db++)
       {
         modifiedthedoc |= new jalview.io.vamsas.Dbref(datastore,
-        // dbentry =
+                // dbentry =
                 entries[db], sq, (Sequence) vobj, dataset).docWasUpdated();
 
       }
@@ -210,7 +211,7 @@ public class Datasetsequence extends DatastoreItem
       for (int db = 0; db < entries.length; db++)
       {
         modifiedtheseq |= new jalview.io.vamsas.Dbref(datastore,
-        // dbentry =
+                // dbentry =
                 entries[db], vsq, sq).jvWasUpdated();
       }
     }
@@ -219,7 +220,8 @@ public class Datasetsequence extends DatastoreItem
 
   public void conflict()
   {
-    log.warn("Conflict in dataset sequence update to document. Overwriting document");
+    log.warn(
+            "Conflict in dataset sequence update to document. Overwriting document");
     // TODO: could try to import from document data to jalview first. and then
     updateToDoc();
   }