X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fschemes%2FBlosum62ColourScheme.java;fp=src%2Fjalview%2Fschemes%2FBlosum62ColourScheme.java;h=90f90f079f7a8f712b56cfee4ca484466b33d755;hb=1c757dc1e6ee864277825c1ebd9c6a9fbe0da7b2;hp=9d092599860175227545083e840dbf595350b41a;hpb=1e5b6995c96364c79329e618f7933caf177b353e;p=jalview.git diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java index 9d09259..90f90f0 100755 --- a/src/jalview/schemes/Blosum62ColourScheme.java +++ b/src/jalview/schemes/Blosum62ColourScheme.java @@ -20,10 +20,10 @@ */ package jalview.schemes; -import jalview.analysis.AAFrequency; import jalview.datamodel.AnnotatedCollectionI; import jalview.datamodel.SequenceCollectionI; import jalview.datamodel.SequenceI; +import jalview.util.Comparison; import java.awt.Color; import java.util.Map; @@ -52,9 +52,9 @@ public class Blosum62ColourScheme extends ResidueColourScheme Color currentColour; - if (!jalview.util.Comparison.isGap(res)) + if (!Comparison.isGap(res)) { - String max = (String) consensus[j].get(AAFrequency.MAXRESIDUE); + String max = consensus[j].getModalResidue(); if (max.indexOf(res) > -1) {