X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjalview%2Fstructure%2FStructureSelectionManager.java;fp=src%2Fjalview%2Fstructure%2FStructureSelectionManager.java;h=9a9e2a233fd2e366b9443fa74bc4eff19186d06a;hb=89f6194d4bba6f8c9efa916e02e6fba2130c5e0f;hp=5865b7fc08057a9c27719a852944b123ff77ef14;hpb=faf491e024f9835435f5dd6c20a033250dd9297d;p=jalview.git

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 5865b7f..9a9e2a2 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -1670,15 +1670,24 @@ public class StructureSelectionManager
   public static void doConfigureStructurePrefs(
           StructureSelectionManager ssm)
   {
-    if (Cache.getDefault(Preferences.ADD_SS_ANN, true))
+    doConfigureStructurePrefs(ssm,
+            Cache.getDefault(Preferences.ADD_SS_ANN, true),
+            Cache.getDefault(Preferences.ADD_TEMPFACT_ANN, true),
+            Cache.getDefault(Preferences.STRUCT_FROM_PDB, true),
+            Cache.getDefault(Preferences.USE_RNAVIEW, false));
+  }
+
+  public static void doConfigureStructurePrefs(
+          StructureSelectionManager ssm, boolean add_ss_ann,
+          boolean add_tempfact_ann, boolean struct_from_pdb,
+          boolean use_rnaview)
+  {
+    if (add_ss_ann)
     {
-      ssm.setAddTempFacAnnot(
-              Cache.getDefault(Preferences.ADD_TEMPFACT_ANN, true));
-      ssm.setProcessSecondaryStructure(
-              Cache.getDefault(Preferences.STRUCT_FROM_PDB, true));
+      ssm.setAddTempFacAnnot(add_tempfact_ann);
+      ssm.setProcessSecondaryStructure(struct_from_pdb);
       // JAL-3915 - RNAView is no longer an option so this has no effect
-      ssm.setSecStructServices(
-              Cache.getDefault(Preferences.USE_RNAVIEW, false));
+      ssm.setSecStructServices(use_rnaview);
     }
     else
     {