X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fjavajs%2Futil%2FOC.java;fp=src%2Fjavajs%2Futil%2FOC.java;h=97f7ddb058b8614de0e30f7277f7fc63bbfcd79e;hb=b9b7a352eee79b7764c3b09c9d19663075061d8c;hp=4a5deb4ca794b33368aff865b45f45f26a64f184;hpb=7301a2415adab88038b291fc54caeeb3a5a47a44;p=jalviewjs.git

diff --git a/src/javajs/util/OC.java b/src/javajs/util/OC.java
index 4a5deb4..97f7ddb 100644
--- a/src/javajs/util/OC.java
+++ b/src/javajs/util/OC.java
@@ -1,386 +1,386 @@
-package javajs.util;
-
-import java.io.BufferedWriter;
-import java.io.ByteArrayOutputStream;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.OutputStream;
-import java.io.OutputStreamWriter;
-
-
-
-import javajs.J2SIgnoreImport;
-import javajs.api.BytePoster;
-import javajs.api.JmolObjectInterface;
-
-/**
- * 
- * A generic output method. JmolOutputChannel can be used to:
- * 
- * add characters to a StringBuffer 
- *   using fileName==null, append() and toString()
- *   
- * add bytes utilizing ByteArrayOutputStream 
- *   using writeBytes(), writeByteAsInt(), append()*, and bytesAsArray()
- *       *append() can be used as long as os==ByteArrayOutputStream
- *        or it is not used before one of the writeByte methods. 
- * 
- * output characters to a FileOutputStream 
- *  using os==FileOutputStream, asWriter==true, append(), and closeChannel()
- *  
- * output bytes to a FileOutputStream 
- *  using os==FileOutputStream, writeBytes(), writeByteAsInt(), append(), and closeChannel()
- * 
- * post characters or bytes to a remote server
- *  using fileName=="http://..." or "https://...",
- *    writeBytes(), writeByteAsInt(), append(), and closeChannel()
- *    
- * send characters or bytes to a JavaScript function
- *  when JavaScript and (typeof fileName == "function")
- *  
- * if fileName equals ";base64,", then the data are base64-encoded
- * prior to writing, and closeChannel() returns the data.
- * 
- *  @author hansonr  Bob Hanson hansonr@stolaf.edu  9/2013
- *  
- *  
- */
-
-@J2SIgnoreImport({ java.io.FileOutputStream.class })
-public class OC extends OutputStream {
- 
-  private BytePoster bytePoster; // only necessary for writing to http:// or https://
-  private String fileName;
-  private BufferedWriter bw;
-  private boolean isLocalFile;
-  private int byteCount;
-  private boolean isCanceled;
-  private boolean closed;
-  private OutputStream os;
-  private SB sb;
-  private String type;
-	private boolean isBase64;
-	private OutputStream os0;
-	private byte[] bytes; // preset bytes; output only
-  
-  public OC setParams(BytePoster bytePoster, String fileName,
-                                     boolean asWriter, OutputStream os) {
-    this.bytePoster = bytePoster;
-    this.fileName = fileName;
-    isBase64 = ";base64,".equals(fileName);
-    if (isBase64) {
-    	fileName = null;
-    	os0 = os;
-    	os = null;
-    }
-    this.os = os;
-    isLocalFile = (fileName != null && !isRemote(fileName));
-    if (asWriter && !isBase64 && os != null)
-      bw = new BufferedWriter(new OutputStreamWriter(os));
-    return this;
-  }
-
-  public OC setBytes(byte[] b) {
-  	bytes = b;
-  	return this;
-  }
-  
-  public String getFileName() {
-    return fileName;
-  }
-  
-  public String getName() {
-    return (fileName == null ? null : fileName.substring(fileName.lastIndexOf("/") + 1));
-  }
-
-  public int getByteCount() {
-    return byteCount;
-  }
-
-  /**
-   * 
-   * @param type  user-identified type (PNG, JPG, etc)
-   */
-  public void setType(String type) {
-    this.type = type;
-  }
-  
-  public String getType() {
-    return type;
-  }
-
-  /**
-   * will go to string buffer if bw == null and os == null
-   * 
-   * @param s
-   * @return this, for chaining like a standard StringBuffer
-   * 
-   */
-  public OC append(String s) {
-    try {
-      if (bw != null) {
-        bw.write(s);
-      } else if (os == null) {
-        if (sb == null)
-          sb = new SB();
-        sb.append(s);
-      } else {
-        byte[] b = s.getBytes();
-        os.write(b, 0, b.length);
-        byteCount += b.length;
-        return this;
-      }
-    } catch (IOException e) {
-      // ignore
-    }
-    byteCount += s.length(); // not necessarily exactly correct if unicode
-    return this;
-  }
-
-  public void reset() {
-    sb = null;
-    initOS();
-  }
-
-
-  private void initOS() {
-    if (sb != null) {
-      String s = sb.toString();
-      reset();
-      append(s);
-      return;
-    }
-    try {
-      /**
-       * @j2sNative
-       * 
-       *            this.os = null;
-       */
-      {
-        if (os instanceof FileOutputStream) {
-          os.close();
-          os = new FileOutputStream(fileName);
-        } else {
-          os = null;
-        }
-      }
-      if (os == null)
-        os = new ByteArrayOutputStream();
-      if (bw != null) {
-        bw.close();
-        bw = new BufferedWriter(new OutputStreamWriter(os));
-      }
-    } catch (Exception e) {
-      // not perfect here.
-      System.out.println(e.toString());
-    }
-    byteCount = 0;
-  }
-
-  /**
-   * @j2sOverride
-   */
-  @Override
-  public void write(byte[] buf, int i, int len) {
-    if (os == null)
-      initOS();
-    try {
-      os.write(buf, i, len);
-    } catch (IOException e) {
-    }
-    byteCount += len;
-  }
-  
-  /**
-   * @param b  
-   */
-  public void writeByteAsInt(int b) {
-    if (os == null)
-      initOS();
-    /**
-     * @j2sNative
-     * 
-     *  this.os.writeByteAsInt(b);
-     * 
-     */
-    {
-      try {
-        os.write(b);
-      } catch (IOException e) {
-      }
-    }
-    byteCount++;
-  }
-  
-  /**
-   * Will break JavaScript if used.
-   * 
-   * @j2sIgnore
-   * 
-   * @param b
-   */
-  @Override
-  @Deprecated
-  public void write(int b) {
-    // required by standard ZipOutputStream -- do not use, as it will break JavaScript methods
-    if (os == null)
-      initOS();
-    try {
-      os.write(b);
-    } catch (IOException e) {
-    }
-    byteCount++;
-  }
-
-//  /**
-//   * Will break if used; no equivalent in JavaScript.
-//   * 
-//   * @j2sIgnore
-//   * 
-//   * @param b
-//   */
-//  @Override
-//  @Deprecated
-//  public void write(byte[] b) {
-//    // not used in JavaScript due to overloading problem there
-//    write(b, 0, b.length);
-//  }
-
-  public void cancel() {
-    isCanceled = true;
-    closeChannel();
-  }
-
-  @SuppressWarnings({ "null", "unused" })
-  public String closeChannel() {
-    if (closed)
-      return null;
-    // can't cancel file writers
-    try {
-      if (bw != null) {
-        bw.flush();
-        bw.close();
-      } else if (os != null) {
-        os.flush();
-        os.close();
-      }
-      if (os0 != null && isCanceled) {
-        os0.flush();
-        os0.close();
-      }
-    } catch (Exception e) {
-      // ignore closing issues
-    }
-    if (isCanceled) {
-      closed = true;
-      return null;
-    }
-    if (fileName == null) {
-      if (isBase64) {
-        String s = getBase64();
-        if (os0 != null) {
-          os = os0;
-          append(s);
-        }
-        sb = new SB();
-        sb.append(s);
-        isBase64 = false;
-        return closeChannel();
-      }
-      return (sb == null ? null : sb.toString());
-    }
-    closed = true;
-    JmolObjectInterface jmol = null;
-    Object _function = null;
-    /**
-     * @j2sNative
-     * 
-     *            jmol = Jmol; _function = (typeof this.fileName == "function" ?
-     *            this.fileName : null);
-     * 
-     */
-    {
-      if (!isLocalFile) {
-        String ret = postByteArray(); // unsigned applet could do this
-        if (ret.startsWith("java.net"))
-          byteCount = -1;
-        return ret;
-      }
-    }
-    if (jmol != null) {
-      Object data = (sb == null ? toByteArray() : sb.toString());
-      if (_function == null)
-        jmol._doAjax(fileName, null, data);
-      else
-        jmol._apply(fileName, data);
-    }
-    return null;
-  }
-
-	public boolean isBase64() {
-		return isBase64;
-	}
-
-	public String getBase64() {
-    return Base64.getBase64(toByteArray()).toString();
-	}
-	
-  public byte[] toByteArray() {
-    return (bytes != null ? bytes : os instanceof ByteArrayOutputStream ? ((ByteArrayOutputStream)os).toByteArray() : null);
-  }
-
-  @Override
-  @Deprecated
-  public void close() {
-    closeChannel();
-  }
-
-  @Override
-  public String toString() {
-    if (bw != null)
-      try {
-        bw.flush();
-      } catch (IOException e) {
-        // TODO
-      }
-    if (sb != null)
-      return closeChannel();
-    return byteCount + " bytes";
-  }
-
-  private String postByteArray() {
-    byte[] bytes = (sb == null ? toByteArray() : sb.toString().getBytes());
-    return bytePoster.postByteArray(fileName, bytes);
-  }
-
-  public final static String[] urlPrefixes = { "http:", "https:", "sftp:", "ftp:",
-  "file:" };
-  // note that SFTP is not supported
-  public final static int URL_LOCAL = 4;
-
-  public static boolean isRemote(String fileName) {
-    if (fileName == null)
-      return false;
-    int itype = urlTypeIndex(fileName);
-    return (itype >= 0 && itype != URL_LOCAL);
-  }
-
-  public static boolean isLocal(String fileName) {
-    if (fileName == null)
-      return false;
-    int itype = urlTypeIndex(fileName);
-    return (itype < 0 || itype == URL_LOCAL);
-  }
-
-  public static int urlTypeIndex(String name) {
-    if (name == null)
-      return -2; // local unsigned applet
-    for (int i = 0; i < urlPrefixes.length; ++i) {
-      if (name.startsWith(urlPrefixes[i])) {
-        return i;
-      }
-    }
-    return -1;
-  }
-
-}
+package javajs.util;
+
+import java.io.BufferedWriter;
+import java.io.ByteArrayOutputStream;
+import java.io.FileOutputStream;
+import java.io.IOException;
+import java.io.OutputStream;
+import java.io.OutputStreamWriter;
+
+
+
+import javajs.J2SIgnoreImport;
+import javajs.api.BytePoster;
+import javajs.api.JmolObjectInterface;
+
+/**
+ * 
+ * A generic output method. JmolOutputChannel can be used to:
+ * 
+ * add characters to a StringBuffer 
+ *   using fileName==null, append() and toString()
+ *   
+ * add bytes utilizing ByteArrayOutputStream 
+ *   using writeBytes(), writeByteAsInt(), append()*, and bytesAsArray()
+ *       *append() can be used as long as os==ByteArrayOutputStream
+ *        or it is not used before one of the writeByte methods. 
+ * 
+ * output characters to a FileOutputStream 
+ *  using os==FileOutputStream, asWriter==true, append(), and closeChannel()
+ *  
+ * output bytes to a FileOutputStream 
+ *  using os==FileOutputStream, writeBytes(), writeByteAsInt(), append(), and closeChannel()
+ * 
+ * post characters or bytes to a remote server
+ *  using fileName=="http://..." or "https://...",
+ *    writeBytes(), writeByteAsInt(), append(), and closeChannel()
+ *    
+ * send characters or bytes to a JavaScript function
+ *  when JavaScript and (typeof fileName == "function")
+ *  
+ * if fileName equals ";base64,", then the data are base64-encoded
+ * prior to writing, and closeChannel() returns the data.
+ * 
+ *  @author hansonr  Bob Hanson hansonr@stolaf.edu  9/2013
+ *  
+ *  
+ */
+
+@J2SIgnoreImport({ java.io.FileOutputStream.class })
+public class OC extends OutputStream {
+ 
+  private BytePoster bytePoster; // only necessary for writing to http:// or https://
+  private String fileName;
+  private BufferedWriter bw;
+  private boolean isLocalFile;
+  private int byteCount;
+  private boolean isCanceled;
+  private boolean closed;
+  private OutputStream os;
+  private SB sb;
+  private String type;
+	private boolean isBase64;
+	private OutputStream os0;
+	private byte[] bytes; // preset bytes; output only
+  
+  public OC setParams(BytePoster bytePoster, String fileName,
+                                     boolean asWriter, OutputStream os) {
+    this.bytePoster = bytePoster;
+    this.fileName = fileName;
+    isBase64 = ";base64,".equals(fileName);
+    if (isBase64) {
+    	fileName = null;
+    	os0 = os;
+    	os = null;
+    }
+    this.os = os;
+    isLocalFile = (fileName != null && !isRemote(fileName));
+    if (asWriter && !isBase64 && os != null)
+      bw = new BufferedWriter(new OutputStreamWriter(os));
+    return this;
+  }
+
+  public OC setBytes(byte[] b) {
+  	bytes = b;
+  	return this;
+  }
+  
+  public String getFileName() {
+    return fileName;
+  }
+  
+  public String getName() {
+    return (fileName == null ? null : fileName.substring(fileName.lastIndexOf("/") + 1));
+  }
+
+  public int getByteCount() {
+    return byteCount;
+  }
+
+  /**
+   * 
+   * @param type  user-identified type (PNG, JPG, etc)
+   */
+  public void setType(String type) {
+    this.type = type;
+  }
+  
+  public String getType() {
+    return type;
+  }
+
+  /**
+   * will go to string buffer if bw == null and os == null
+   * 
+   * @param s
+   * @return this, for chaining like a standard StringBuffer
+   * 
+   */
+  public OC append(String s) {
+    try {
+      if (bw != null) {
+        bw.write(s);
+      } else if (os == null) {
+        if (sb == null)
+          sb = new SB();
+        sb.append(s);
+      } else {
+        byte[] b = s.getBytes();
+        os.write(b, 0, b.length);
+        byteCount += b.length;
+        return this;
+      }
+    } catch (IOException e) {
+      // ignore
+    }
+    byteCount += s.length(); // not necessarily exactly correct if unicode
+    return this;
+  }
+
+  public void reset() {
+    sb = null;
+    initOS();
+  }
+
+
+  private void initOS() {
+    if (sb != null) {
+      String s = sb.toString();
+      reset();
+      append(s);
+      return;
+    }
+    try {
+      /**
+       * @j2sNative
+       * 
+       *            this.os = null;
+       */
+      {
+        if (os instanceof FileOutputStream) {
+          os.close();
+          os = new FileOutputStream(fileName);
+        } else {
+          os = null;
+        }
+      }
+      if (os == null)
+        os = new ByteArrayOutputStream();
+      if (bw != null) {
+        bw.close();
+        bw = new BufferedWriter(new OutputStreamWriter(os));
+      }
+    } catch (Exception e) {
+      // not perfect here.
+      System.out.println(e.toString());
+    }
+    byteCount = 0;
+  }
+
+  /**
+   * @j2sOverride
+   */
+  @Override
+  public void write(byte[] buf, int i, int len) {
+    if (os == null)
+      initOS();
+    try {
+      os.write(buf, i, len);
+    } catch (IOException e) {
+    }
+    byteCount += len;
+  }
+  
+  /**
+   * @param b  
+   */
+  public void writeByteAsInt(int b) {
+    if (os == null)
+      initOS();
+    /**
+     * @j2sNative
+     * 
+     *  this.os.writeByteAsInt(b);
+     * 
+     */
+    {
+      try {
+        os.write(b);
+      } catch (IOException e) {
+      }
+    }
+    byteCount++;
+  }
+  
+  /**
+   * Will break JavaScript if used.
+   * 
+   * @j2sIgnore
+   * 
+   * @param b
+   */
+  @Override
+  @Deprecated
+  public void write(int b) {
+    // required by standard ZipOutputStream -- do not use, as it will break JavaScript methods
+    if (os == null)
+      initOS();
+    try {
+      os.write(b);
+    } catch (IOException e) {
+    }
+    byteCount++;
+  }
+
+//  /**
+//   * Will break if used; no equivalent in JavaScript.
+//   * 
+//   * @j2sIgnore
+//   * 
+//   * @param b
+//   */
+//  @Override
+//  @Deprecated
+//  public void write(byte[] b) {
+//    // not used in JavaScript due to overloading problem there
+//    write(b, 0, b.length);
+//  }
+
+  public void cancel() {
+    isCanceled = true;
+    closeChannel();
+  }
+
+  @SuppressWarnings({ "null", "unused" })
+  public String closeChannel() {
+    if (closed)
+      return null;
+    // can't cancel file writers
+    try {
+      if (bw != null) {
+        bw.flush();
+        bw.close();
+      } else if (os != null) {
+        os.flush();
+        os.close();
+      }
+      if (os0 != null && isCanceled) {
+        os0.flush();
+        os0.close();
+      }
+    } catch (Exception e) {
+      // ignore closing issues
+    }
+    if (isCanceled) {
+      closed = true;
+      return null;
+    }
+    if (fileName == null) {
+      if (isBase64) {
+        String s = getBase64();
+        if (os0 != null) {
+          os = os0;
+          append(s);
+        }
+        sb = new SB();
+        sb.append(s);
+        isBase64 = false;
+        return closeChannel();
+      }
+      return (sb == null ? null : sb.toString());
+    }
+    closed = true;
+    JmolObjectInterface jmol = null;
+    Object _function = null;
+    /**
+     * @j2sNative
+     * 
+     *            jmol = Jmol; _function = (typeof this.fileName == "function" ?
+     *            this.fileName : null);
+     * 
+     */
+    {
+      if (!isLocalFile) {
+        String ret = postByteArray(); // unsigned applet could do this
+        if (ret.startsWith("java.net"))
+          byteCount = -1;
+        return ret;
+      }
+    }
+    if (jmol != null) {
+      Object data = (sb == null ? toByteArray() : sb.toString());
+      if (_function == null)
+        jmol._doAjax(fileName, null, data);
+      else
+        jmol._apply(fileName, data);
+    }
+    return null;
+  }
+
+	public boolean isBase64() {
+		return isBase64;
+	}
+
+	public String getBase64() {
+    return Base64.getBase64(toByteArray()).toString();
+	}
+	
+  public byte[] toByteArray() {
+    return (bytes != null ? bytes : os instanceof ByteArrayOutputStream ? ((ByteArrayOutputStream)os).toByteArray() : null);
+  }
+
+  @Override
+  @Deprecated
+  public void close() {
+    closeChannel();
+  }
+
+  @Override
+  public String toString() {
+    if (bw != null)
+      try {
+        bw.flush();
+      } catch (IOException e) {
+        // TODO
+      }
+    if (sb != null)
+      return closeChannel();
+    return byteCount + " bytes";
+  }
+
+  private String postByteArray() {
+    byte[] bytes = (sb == null ? toByteArray() : sb.toString().getBytes());
+    return bytePoster.postByteArray(fileName, bytes);
+  }
+
+  public final static String[] urlPrefixes = { "http:", "https:", "sftp:", "ftp:",
+  "file:" };
+  // note that SFTP is not supported
+  public final static int URL_LOCAL = 4;
+
+  public static boolean isRemote(String fileName) {
+    if (fileName == null)
+      return false;
+    int itype = urlTypeIndex(fileName);
+    return (itype >= 0 && itype != URL_LOCAL);
+  }
+
+  public static boolean isLocal(String fileName) {
+    if (fileName == null)
+      return false;
+    int itype = urlTypeIndex(fileName);
+    return (itype < 0 || itype == URL_LOCAL);
+  }
+
+  public static int urlTypeIndex(String name) {
+    if (name == null)
+      return -2; // local unsigned applet
+    for (int i = 0; i < urlPrefixes.length; ++i) {
+      if (name.startsWith(urlPrefixes[i])) {
+        return i;
+      }
+    }
+    return -1;
+  }
+
+}