X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;ds=sidebyside;f=src%2Fuk%2Fac%2Fvamsas%2Fclient%2FVorbaIdFactory.java;h=8b0e98aa4b0c6e3a104ae04a7d2d5a14256fec27;hb=844ccad5a3fcbedec17b2af66d460f31abc7cff1;hp=c5a5079904b5a04a4538fa0e9b7ed15123c67690;hpb=6f33f705957d674dc2ab6c994a6ea87f7a91f40f;p=vamsas.git

diff --git a/src/uk/ac/vamsas/client/VorbaIdFactory.java b/src/uk/ac/vamsas/client/VorbaIdFactory.java
index c5a5079..8b0e98a 100644
--- a/src/uk/ac/vamsas/client/VorbaIdFactory.java
+++ b/src/uk/ac/vamsas/client/VorbaIdFactory.java
@@ -1,8 +1,23 @@
 /*
- * Created on 12-Sep-2005
- *
- * TODO To change the template for this generated file go to
- * Window - Preferences - Java - Code Style - Code Templates
+ * This file is part of the Vamsas Client version 0.1. 
+ * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ *  Andrew Waterhouse and Dominik Lindner.
+ * 
+ * Earlier versions have also been incorporated into Jalview version 2.4 
+ * since 2008, and TOPALi version 2 since 2007.
+ * 
+ * The Vamsas Client is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *  
+ * The Vamsas Client is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
  */
 package uk.ac.vamsas.client;
 
@@ -10,9 +25,8 @@ import java.util.Hashtable;
 import java.util.Vector;
 
 /**
- * A VorbaIdFactory is constructed by an IClient instance.
- * It guarantees that any new VorbaId objects are unique 
- * within the VAMSAS session.
+ * A VorbaIdFactory is constructed by an IClient instance. It guarantees that
+ * any new VorbaId objects are unique within the VAMSAS session.
  * 
  * @author jimp
  */
@@ -20,16 +34,18 @@ public abstract class VorbaIdFactory implements IVorbaIdFactory {
   /**
    * hash of VorbaIds to Vobject.
    */
-  protected Hashtable extantids=null;
+  protected Hashtable extantids = null;
+
   /**
    * hash of VorbaIds to persisted hash values
    */
-  protected Hashtable extanthashv=null;
+  protected Hashtable extanthashv = null;
+
   /**
    * list of Vobjects added since last Document read.
    */
-  protected Vector newobj=null;
-  
+  protected Vector newobj = null;
+
   /**
    * construct a new id appropriate for this client in the vamsas session.
    * 
@@ -37,28 +53,35 @@ public abstract class VorbaIdFactory implements IVorbaIdFactory {
    *         correctly.
    */
   public abstract VorbaId makeVorbaId(Vobject vobject);
-  
+
   /**
-   * internal method to access the protected VorbaId object constructor
-   * This shennanigan is to prevent casual generation of VorbaIds 
-   * (which may destroy the integrity of a Vamsas Document!)
+   * internal method to access the protected VorbaId object constructor This
+   * shennanigan is to prevent casual generation of VorbaIds (which may destroy
+   * the integrity of a Vamsas Document!)
+   * 
    * @param id
    * @return new VorbaId object
    */
   protected VorbaId newId(String id) {
     return VorbaId.newId(id);
   }
+
   /**
-   * Called by VorbaXmlBinder so the record of newly unmarshalled Vobject Ids
-   * is accessible to the Document's VorbaIdFactory instance. 
+   * Called by VorbaXmlBinder so the record of newly unmarshalled Vobject Ids is
+   * accessible to the Document's VorbaIdFactory instance.
+   * 
    * @param idtable
    */
   protected void setNewIdHash(Hashtable idtable) {
     extantids = idtable;
   }
-  
-  /* (non-Javadoc)
-   * @see uk.ac.vamsas.client.IVorbaIdFactory#updateHashValue(uk.ac.vamsas.client.Vobject)
+
+  /*
+   * (non-Javadoc)
+   * 
+   * @see
+   * uk.ac.vamsas.client.IVorbaIdFactory#updateHashValue(uk.ac.vamsas.client
+   * .Vobject)
    */
   public void updateHashValue(Vobject vobject) {
     if (vobject.isRegisterable())