X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=.classpath;h=7d02b378931d4ce3634b279cb6006a29f76fd4b3;hb=1a04478ca5d5fa6bae27f8e7220df5b57fe1c698;hp=9164f3d7ee6482d6791173ac5c65e696d586baa4;hpb=c75ca41e87495a7d86ebc3c8cbeb56610ac48758;p=jalview.git

diff --git a/.classpath b/.classpath
index 9164f3d..7d02b37 100644
--- a/.classpath
+++ b/.classpath
@@ -13,7 +13,6 @@
 	<classpathentry kind="lib" path="lib/saaj.jar"/>
 	<classpathentry kind="lib" path="lib/wsdl4j.jar"/>
 	<classpathentry kind="lib" path="lib/xercesImpl.jar"/>
-	<classpathentry kind="lib" path="lib/castor-1.1-cycle-xml.jar" sourcepath="C:/Documents and Settings/JimP/workspace-3.3/castor/src/main/java"/>
 	<classpathentry kind="lib" path="lib/JGoogleAnalytics_0.3.jar" sourcepath="/JGoogleAnalytics/src/main/java"/>
 	<classpathentry kind="lib" path="lib/vamsas-client.jar"/>
 	<classpathentry kind="lib" path="lib/commons-logging-1.1.1.jar"/>
@@ -36,11 +35,9 @@
 	<classpathentry kind="lib" path="lib/miglayout-4.0-swing.jar"/>
 	<classpathentry kind="lib" path="lib/jswingreader-0.3.jar" sourcepath="/jswingreader"/>
 	<classpathentry kind="lib" path="lib/commons-codec-1.3.jar"/>
-	<classpathentry kind="lib" path="lib/jdas-1.0.4.jar"/>
 	<classpathentry kind="lib" path="lib/spring-core-3.0.5.RELEASE.jar"/>
 	<classpathentry kind="lib" path="lib/spring-web-3.0.5.RELEASE.jar"/>
-	<classpathentry kind="lib" path="lib/groovy-all-1.8.2.jar"/>
-	<classpathentry kind="lib" path="lib/min-jabaws-client-2.1.0.jar" sourcepath="/clustengine"/>
+	<classpathentry kind="lib" path="lib/jabaws-min-client-2.2.0.jar" sourcepath="/clustengine"/>
 	<classpathentry kind="lib" path="lib/json_simple-1.1.jar" sourcepath="/Users/jimp/Downloads/json_simple-1.1-all.zip"/>
 	<classpathentry kind="lib" path="lib/slf4j-api-1.7.7.jar"/>
 	<classpathentry kind="lib" path="lib/jsoup-1.8.1.jar"/>
@@ -49,11 +46,11 @@
 	<classpathentry kind="lib" path="lib/VARNAv3-93.jar"/>
 	<classpathentry kind="lib" path="lib/jfreesvg-2.1.jar"/>
 	<classpathentry kind="lib" path="lib/quaqua-filechooser-only-8.0.jar"/>
-	<classpathentry kind="lib" path="lib/htsjdk-1.133.jar"/>
+	<classpathentry kind="lib" path="lib/VAqua5-patch.jar"/>
+	<classpathentry kind="lib" path="utils/classgraph-4.1.6.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/plugin"/>
 	<classpathentry kind="lib" path="lib/xml-apis.jar"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.USER_LIBRARY/Plugin.jar"/>
 	<classpathentry kind="lib" path="lib/jersey-client-1.19.jar"/>
 	<classpathentry kind="lib" path="lib/jersey-core-1.19.jar"/>
@@ -65,7 +62,13 @@
 	<classpathentry kind="lib" path="lib/jetty-http-9.2.10.v20150310.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-io-9.2.10.v20150310.jar"/>
 	<classpathentry kind="lib" path="lib/java-json.jar"/>
-	<classpathentry kind="lib" path="lib/Jmol-14.2.14_2015.06.11.jar"/>
+	<classpathentry kind="lib" path="lib/Jmol-14.6.4_2016.10.26.jar"/>
 	<classpathentry kind="con" path="org.testng.TESTNG_CONTAINER"/>
+	<classpathentry kind="lib" path="lib/biojava-core-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/biojava-ontology-4.1.0.jar"/>
+	<classpathentry kind="lib" path="lib/htsjdk-2.12.0.jar"/>
+	<classpathentry kind="lib" path="lib/groovy-all-2.4.12-indy.jar"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8"/>
+	<classpathentry kind="lib" path="lib/intervalstore-v0.4.jar"/>
 	<classpathentry kind="output" path="classes"/>
 </classpath>