X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=THIRDPARTYLIBS;h=7d4ffc71ca33e6f469a17c3a6c2d90838719a2df;hb=60068a9887dba34c9e7cf49b2f5f53a6fdc15931;hp=85aa587198fe9588b2c6610f7e61f43060e07990;hpb=fc75b80aa07137161c63456c0b69999e80f164d1;p=jalview.git

diff --git a/THIRDPARTYLIBS b/THIRDPARTYLIBS
index 85aa587..7d4ffc7 100644
--- a/THIRDPARTYLIBS
+++ b/THIRDPARTYLIBS
@@ -9,11 +9,12 @@ ext.edu.ucsf.rbvi.strucviz2 includes sources originally developed by Scooter Mor
  
  jalview.ext.android includes code taken from the Android Open Source Project (https://android.googlesource.com/platform/frameworks/base/+/master/core/java/android/util).
  The Apache 2.0 Licence (http://www.apache.org/licenses/LICENSE-2.0) is acknowledged in the source code.
+ org.stackoverflowusers.file.WindowsShortcuts was downloaded from http://github.com/codebling/WindowsShortcuts via https://stackoverflow.com/questions/309495/windows-shortcut-lnk-parser-in-java 
 
 Licensing information for each library is given below:
 
 JGoogleAnalytics_0.3.jar	APL 2.0 License - http://code.google.com/p/jgoogleanalytics/
-Jmol-14.2.14_2015.06.11.jar	GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/
+Jmol-14.6.4_2016.10.26.jar	GPL/LGPLv2 http://sourceforge.net/projects/jmol/files/
 VARNAv3-93.jar GPL licenced software by K�vin Darty, Alain Denise and Yann Ponty. http://varna.lri.fr
 activation.jar	
 apache-mime4j-0.6.jar
@@ -49,6 +50,8 @@ jfreesvg-2.1.jar : GPL v3 licensed library from the JFree suite: http://www.jfre
 
 quaqua: v.8.0 (latest stable) by Randel S Hofer. LGPL and BSD Modified license: downloaded from http://www.randelshofer.ch/quaqua/ 
 
+vaqua5-patch: This is a patched version of VAqua v5 (latest stable) by Alan Snyder et al. GPLv3 with Classpath exception, also includes contributions from Quaqua: http://violetlib.org/vaqua/overview.html - see doc/patching-vaqua.txt for patch details, and http://issues.jalview.org/browse/JAL-2988 for details of the bug that the patch addresses.
+
 lib/htsjdk-1.120-SNAPSHOT.jar: (currently not required for 2.10) built from maven master at https://github.com/samtools/htsjdk MIT License to Broad Institute
 
 lib/biojava-core-4.1.0.jar LGPLv2.1 - latest license at https://github.com/biojava/biojava/blob/master/LICENSE