X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=TODO.txt;h=4ad000bbad1e7c80bf6b1209699d1f5c0cced5e8;hb=79f221c4bce618320fa5b7bdefa36431bc2b3460;hp=d502d4885a849cee78ce1de37f33ccdd8d3dc52d;hpb=eff7555f38a27ff33111f4ff1e83c4ae8186df16;p=jabaws.git

diff --git a/TODO.txt b/TODO.txt
index d502d48..4ad000b 100644
--- a/TODO.txt
+++ b/TODO.txt
@@ -1,71 +1,64 @@
-JABA 1 is to keep working, later when 2 is ready replace jabaws mapping to point to 
-JABA 2 but provide a link to JABA 1.  
-
-+install JABA 1 stat server 
-
-+Get path to Java executable from JAVA_HOME ? (for Jronn AACon) 
-+Describe requirements 
 
+Write help on 
+ + execution stats
+ + new menu bar background 
+ - new page background(?)
+ - merge developers help pages
+ - new VM 
+ - new properties e.g. jar
+ - registry
+ - change log 
+ - main page should point to JABA 1   
+ - Document the Limits for presets
+ - JAVA DOCS
+ - defaults changed - e.g. limits are disabled - explain how to enable
+ - cluster settings are commented out 
+ - Describe requirements 
 Python > 2.2
 Perl > 5.0
 Java > 6
-
 For compilation 
 C++
 C
 Gnu make
+   
+- Check progress tracking on large sequence.
 
-Webpage for testing web services?
-
-Crawler is to update DB records if the directory is not found to prevent link 
-generation for stats. 
-
- 
+- Add more detailed tests for webservices? 
 
-+ Help information? - relative - client to add host and context info
-+ statistics - result files 
-+ Check progress tracking on large sequence. 
++ TODO write some help on the executable.properties within this file! 
 
-Add more detailed tests for webservices? 
+- check that after binaries relocation build tasks point to correct locations!
 
-? ideally should introduce native Mac support (and maybe abandon native windows support in 
-favour of VM)   
-
-TODO write some help on the executable.properties within this file! 
-check that after binaries relocation build tasks point to correct locations!
-
-Cluster stats: 
- -Remove hyperlinks from tasks which workdirs were removed 
- -graph generation 
- -user documentation (do not forget how to enable follow symlinks!)
 
 add to help text: To disable a web service remove it from WEB-INF/sun-jaxws.xml descriptor
 
 rename jaba.war to jabaws.war and make sure jabaws context path is used throughout. 
 
-+ Current stat collector has to rely on file dates! 
-
 
 ? Replace conservation.Method with server.ws.Method and try building WS. If this does not work - get rid of Method
 
 integrate the above to tweak the size of the local job
 
-+ Good toString method for Limits (test with command line client -limits)
-Document the Limits for presets
-JABA DOCS
 
 (later) Add documentation on Presets, Parameters and Limits
 (later) Explain how to define a limit
 
 Add test for repeated result collection from cluster engine
 
-(low) Pack the test cases and build file to run them in one of the distributives 
 
 
 DONE
 
 version 2
 
+DONE: Current stat collector has to rely on file dates! 
+DONE: Help information? - relative - client to add host and context info
+DONE: statistics - result files 
+DONE: Good toString method for Limits (test with command line client -limits)
+DONE: install JABA 1 stat server 
+DONE: Get path to Java executable from JAVA_HOME ? (for Jronn AACon) 
+
 DONE:  GET rid of binaries/help directory!
 DONE:  update binaries
  DONE:  muscle binary version 3.8.31 for win/lin32/lin64 and sources, docs in website/prog_docs