X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=TODO.txt;h=4dc9f9b0c35c8a43b6d508caf5501217dbd1e579;hb=7d95ae4c69a42a125d385912a49b31b38ac99e3b;hp=45a50d4a95ff3a901ef8a2712a9cabca26a366f3;hpb=db5333c93e7d29d2a6eb301a017300583bc9f44c;p=jabaws.git

diff --git a/TODO.txt b/TODO.txt
index 45a50d4..4dc9f9b 100644
--- a/TODO.txt
+++ b/TODO.txt
@@ -1,47 +1,68 @@
-? ideally should introduce native Mac support (and maybe abandon native windows support in 
-favour of VM)   
+reset execution statistic in VM!
+
++ regerate javadoc
++ server war - obtaining command line binaries 
+
+Write help on 
+ + execution stats
+ + new menu bar background 
+ - new page background(?)
+ - merge developers help pages
+ - new VM 
+ - new properties e.g. jar
+ - registry
+ - change log 
+ - main page should point to JABA 1   
+ - Document the Limits for presets
+ - JAVA DOCS
+ - defaults changed - e.g. limits are disabled - explain how to enable
+ - cluster settings are commented out 
+ - Describe requirements 
+Python > 2.2
+Perl > 5.0
+Java > 6
+For compilation 
+C++
+C
+Gnu make
+   
+- Check progress tracking on large sequence.
+
+- Add more detailed tests for webservices? 
+
++ TODO write some help on the executable.properties within this file! 
+
+- check that after binaries relocation build tasks point to correct locations!
 
-TODO write some help on the executable.properties within this file! 
-check that after binaries relocation build tasks point to correct locations!
-
-Cluster stats: 
- -Remove hyperlinks from tasks which workdirs were removed 
- -graph generation 
- -user documentation (do not forget how to enable follow symlinks!)
 
 add to help text: To disable a web service remove it from WEB-INF/sun-jaxws.xml descriptor
 
 rename jaba.war to jabaws.war and make sure jabaws context path is used throughout. 
 
-Current stat collector has to rely on file dates! 
-
-Globprot need a proper reference to bio python and sav_gol binaries -> they should be 
-somehow taken from disembl. 
-
 
 ? Replace conservation.Method with server.ws.Method and try building WS. If this does not work - get rid of Method
 
-Output file parsing for stat reporting
-install cluster engine stat of www-jws2 user
-
 integrate the above to tweak the size of the local job
 
-Good toString method for Limits (test with command line client -limits)
-Document the Limits for presets
-JABA DOCS
 
 (later) Add documentation on Presets, Parameters and Limits
 (later) Explain how to define a limit
 
 Add test for repeated result collection from cluster engine
 
-(low) Pack the test cases and build file to run them in one of the distributives 
 
 
 DONE
 
 version 2
 
+DONE: Current stat collector has to rely on file dates! 
+DONE: Help information? - relative - client to add host and context info
+DONE: statistics - result files 
+DONE: Good toString method for Limits (test with command line client -limits)
+DONE: install JABA 1 stat server 
+DONE: Get path to Java executable from JAVA_HOME ? (for Jronn AACon) 
+
 DONE:  GET rid of binaries/help directory!
 DONE:  update binaries
  DONE:  muscle binary version 3.8.31 for win/lin32/lin64 and sources, docs in website/prog_docs