X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2Fsrc%2FViennaRNA%2Fdoc%2Flatex%2Fgroup__eval.aux;h=bc67eacf91940751c0f971186e7d005569f261b2;hb=ecfc686151bf027d4deb3c7a7510861d35c51730;hp=7e02b00cdd992192a64667120c0b0e5b45989533;hpb=b4ff3ef8dc5d197f41d83de832e94e3b45a5c12e;p=jabaws.git

diff --git a/binaries/src/ViennaRNA/doc/latex/group__eval.aux b/binaries/src/ViennaRNA/doc/latex/group__eval.aux
index 7e02b00..bc67eac 100644
--- a/binaries/src/ViennaRNA/doc/latex/group__eval.aux
+++ b/binaries/src/ViennaRNA/doc/latex/group__eval.aux
@@ -1,41 +1,23 @@
 \relax 
-\@writefile{toc}{\contentsline {section}{\numberline {9.25}Energy evaluation}{73}{section.9.25}}
-\newlabel{group__eval}{{9.25}{73}{Energy evaluation\relax }{section.9.25}{}}
-\newlabel{group__eval_ga567530678f6260a1a649a5beca5da4c5}{{9.25}{73}{Variables\relax }{section*.53}{}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {9.25.1}Detailed Description}{73}{subsection.9.25.1}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {9.25.2}Function Documentation}{73}{subsection.9.25.2}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.1}energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure}{73}{subsubsection.9.25.2.1}}
-\newlabel{group__eval_gaf93986cb3cb29770ec9cca69c9fab8cf}{{9.25.2.1}{73}{energy\-\_\-of\-\_\-structure\relax }{subsubsection.9.25.2.1}{}}
-\gdef \LT@liv {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\gdef \LT@lv {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.2}energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par}{74}{subsubsection.9.25.2.2}}
-\newlabel{group__eval_gab5169ea4f72f250e43811463a33f4e40}{{9.25.2.2}{74}{energy\-\_\-of\-\_\-struct\-\_\-par\relax }{subsubsection.9.25.2.2}{}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.3}energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}structure}{74}{subsubsection.9.25.2.3}}
-\newlabel{group__eval_gaeb14f3664aec67fc03268ac75253f0f8}{{9.25.2.3}{74}{energy\-\_\-of\-\_\-circ\-\_\-structure\relax }{subsubsection.9.25.2.3}{}}
-\gdef \LT@lvi {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\gdef \LT@lvii {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\gdef \LT@lviii {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.4}energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}circ\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}par}{75}{subsubsection.9.25.2.4}}
-\newlabel{group__eval_ga75dc765ee4a1177832bc817c94cf88e5}{{9.25.2.4}{75}{energy\-\_\-of\-\_\-circ\-\_\-struct\-\_\-par\relax }{subsubsection.9.25.2.4}{}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.5}energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}structure\discretionary {-}{}{}\_\discretionary {-}{}{}pt}{75}{subsubsection.9.25.2.5}}
-\newlabel{group__eval_ga8831445966b761417e713360791299d8}{{9.25.2.5}{75}{energy\-\_\-of\-\_\-structure\-\_\-pt\relax }{subsubsection.9.25.2.5}{}}
-\gdef \LT@lix {\LT@entry 
-    {1}{78.18367pt}\LT@entry 
-    {1}{380.5249pt}}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.6}energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}struct\discretionary {-}{}{}\_\discretionary {-}{}{}pt\discretionary {-}{}{}\_\discretionary {-}{}{}par}{76}{subsubsection.9.25.2.6}}
-\newlabel{group__eval_gada4701dd7519b29da75ceac147601f4e}{{9.25.2.6}{76}{energy\-\_\-of\-\_\-struct\-\_\-pt\-\_\-par\relax }{subsubsection.9.25.2.6}{}}
+\@writefile{toc}{\contentsline {section}{\numberline {9.25}Energy evaluation}{93}{section.9.25}}
+\newlabel{group__eval}{{9.25}{93}{Energy evaluation\relax }{section.9.25}{}}
+\newlabel{group__eval_ga567530678f6260a1a649a5beca5da4c5}{{9.25}{93}{Variables\relax }{section*.52}{}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {9.25.1}Detailed Description}{93}{subsection.9.25.1}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {9.25.2}Function Documentation}{94}{subsection.9.25.2}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.1}energy\_\discretionary {-}{}{}of\_\discretionary {-}{}{}structure}{94}{subsubsection.9.25.2.1}}
+\newlabel{group__eval_gaf93986cb3cb29770ec9cca69c9fab8cf}{{9.25.2.1}{94}{energy\_\-of\_\-structure\relax }{subsubsection.9.25.2.1}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.2}energy\_\discretionary {-}{}{}of\_\discretionary {-}{}{}struct\_\discretionary {-}{}{}par}{94}{subsubsection.9.25.2.2}}
+\newlabel{group__eval_gab5169ea4f72f250e43811463a33f4e40}{{9.25.2.2}{94}{energy\_\-of\_\-struct\_\-par\relax }{subsubsection.9.25.2.2}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.3}energy\_\discretionary {-}{}{}of\_\discretionary {-}{}{}circ\_\discretionary {-}{}{}structure}{95}{subsubsection.9.25.2.3}}
+\newlabel{group__eval_gaeb14f3664aec67fc03268ac75253f0f8}{{9.25.2.3}{95}{energy\_\-of\_\-circ\_\-structure\relax }{subsubsection.9.25.2.3}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.4}energy\_\discretionary {-}{}{}of\_\discretionary {-}{}{}circ\_\discretionary {-}{}{}struct\_\discretionary {-}{}{}par}{95}{subsubsection.9.25.2.4}}
+\newlabel{group__eval_ga75dc765ee4a1177832bc817c94cf88e5}{{9.25.2.4}{95}{energy\_\-of\_\-circ\_\-struct\_\-par\relax }{subsubsection.9.25.2.4}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.5}energy\_\discretionary {-}{}{}of\_\discretionary {-}{}{}structure\_\discretionary {-}{}{}pt}{96}{subsubsection.9.25.2.5}}
+\newlabel{group__eval_ga8831445966b761417e713360791299d8}{{9.25.2.5}{96}{energy\_\-of\_\-structure\_\-pt\relax }{subsubsection.9.25.2.5}{}}
+\@writefile{toc}{\contentsline {subsubsection}{\numberline {9.25.2.6}energy\_\discretionary {-}{}{}of\_\discretionary {-}{}{}struct\_\discretionary {-}{}{}pt\_\discretionary {-}{}{}par}{96}{subsubsection.9.25.2.6}}
+\newlabel{group__eval_gada4701dd7519b29da75ceac147601f4e}{{9.25.2.6}{96}{energy\_\-of\_\-struct\_\-pt\_\-par\relax }{subsubsection.9.25.2.6}{}}
 \@setckpt{group__eval}{
-\setcounter{page}{77}
+\setcounter{page}{97}
 \setcounter{equation}{0}
 \setcounter{enumi}{0}
 \setcounter{enumii}{0}
@@ -51,18 +33,11 @@
 \setcounter{paragraph}{0}
 \setcounter{subparagraph}{0}
 \setcounter{figure}{0}
-\setcounter{table}{59}
-\setcounter{NAT@ctr}{0}
+\setcounter{table}{0}
 \setcounter{float@type}{8}
+\setcounter{lstlisting}{0}
 \setcounter{lstnumber}{1}
 \setcounter{Item}{0}
 \setcounter{Hfootnote}{0}
-\setcounter{bookmark@seq@number}{177}
-\setcounter{lofdepth}{1}
-\setcounter{lotdepth}{1}
-\setcounter{LT@tables}{59}
-\setcounter{LT@chunks}{1}
-\setcounter{PWSTtable}{0}
-\setcounter{lstlisting}{0}
 \setcounter{section@level}{3}
 }