X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2Fsrc%2FViennaRNA%2Fdoc%2Flatex%2Fsvm__utils_8h_source.tex;fp=binaries%2Fsrc%2FViennaRNA%2Fdoc%2Flatex%2Fsvm__utils_8h_source.tex;h=bda377e4db43becd9837b175b9d26c3630449b2d;hb=6ccf6e7acc4d35484ae6ad0f03d22c19b8ce63fc;hp=0000000000000000000000000000000000000000;hpb=f96c106fc2e76aff65de8adebdd31069fe3a1a05;p=jabaws.git

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+\hypertarget{svm__utils_8h}{\section{svm\-\_\-utils.\-h}
+\label{svm__utils_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/svm\-\_\-utils.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/svm\-\_\-utils.\-h}}
+}
+
+\begin{DoxyCode}
+00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
+00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
+00003 \textcolor{preprocessor}{}
+\hypertarget{svm__utils_8h_source_l00004}{}\hyperlink{structsvm__model}{00004} \textcolor{keyword}{typedef} \textcolor{keyword}{struct }\hyperlink{structsvm__model}{svm\_model}\{
+00005   \textcolor{keyword}{struct }svm\_parameter param;
+00006   \textcolor{keywordtype}{int} nr\_class;
+00007   \textcolor{keywordtype}{int} l;
+00008   \textcolor{keyword}{struct }svm\_node **SV;
+00009   \textcolor{keywordtype}{double} **sv\_coef;
+00010   \textcolor{keywordtype}{double} *rho;
+00011   \textcolor{keywordtype}{double} *probA;
+00012   \textcolor{keywordtype}{double} *probB;
+00013   \textcolor{keywordtype}{int} *label;
+00014   \textcolor{keywordtype}{int} *nSV;
+00015   \textcolor{keywordtype}{int} free\_sv;
+00016 \} \hyperlink{structsvm__model}{svm\_model};
+00017 
+00018 \textcolor{keyword}{extern}  \textcolor{keywordtype}{char} *avg\_model\_string;
+00019 \textcolor{keyword}{extern}  \textcolor{keywordtype}{char} *sd\_model\_string;
+00020 
+00021 \textcolor{keywordtype}{float}     get\_z(\textcolor{keywordtype}{char} *sequence,
+00022                 \textcolor{keywordtype}{double} energy);
+00023 \textcolor{keywordtype}{double}    avg\_regression (\textcolor{keywordtype}{int} N,
+00024                           \textcolor{keywordtype}{int} A,
+00025                           \textcolor{keywordtype}{int} C,
+00026                           \textcolor{keywordtype}{int} G,
+00027                           \textcolor{keywordtype}{int} T,
+00028                           \textcolor{keyword}{struct} \hyperlink{structsvm__model}{svm\_model} *avg\_model,
+00029                           \textcolor{keywordtype}{int} *info );
+00030 \textcolor{keywordtype}{double}    sd\_regression  (\textcolor{keywordtype}{int} N,
+00031                           \textcolor{keywordtype}{int} A,
+00032                           \textcolor{keywordtype}{int} C,
+00033                           \textcolor{keywordtype}{int} G,
+00034                           \textcolor{keywordtype}{int} T,
+00035                           \textcolor{keyword}{struct} \hyperlink{structsvm__model}{svm\_model}  *sd\_model);
+00036 \textcolor{keywordtype}{double}    minimal\_sd     (\textcolor{keywordtype}{int} N,
+00037                           \textcolor{keywordtype}{int} A,
+00038                           \textcolor{keywordtype}{int} C,
+00039                           \textcolor{keywordtype}{int} G,
+00040                           \textcolor{keywordtype}{int} T);
+00041 \hyperlink{structsvm__model}{svm\_model} *svm\_load\_model\_string(\textcolor{keywordtype}{char} *modelString);
+00042 \textcolor{keywordtype}{int}       *get\_seq\_composition( \textcolor{keywordtype}{short} *S,
+00043                                 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} start,
+00044                                 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} stop);
+00045 
+00046 \textcolor{preprocessor}{#endif}
+\end{DoxyCode}