X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=binaries%2Fsrc%2Fcompilebin.sh;h=39562e8051ecddbe86ffd4f7aa4152a200575c83;hb=e8d7803afda8d4346a66f44cc7d5bd1cfd3fd81d;hp=b0e478b3a1c53ea28c4379285311da122bd997a9;hpb=52c72920153b890075fdccb25333815608afca0e;p=jabaws.git

diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh
index b0e478b..39562e8 100644
--- a/binaries/src/compilebin.sh
+++ b/binaries/src/compilebin.sh
@@ -51,8 +51,9 @@ cd tcoffee
 chmod +x install
 ./install clean
 ./install t_coffee -force
+echo -e '#!/usr/bin/env bash\nPDIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"\nexport PATH=$PATH:$PDIR\nt_coffee "$@"' > t_coffee_source/t_coffee.sh
 chmod +x t_coffee_source/t_coffee
-export PATH=$PATH:$PWD/t_coffee_source
+chmod +x t_coffee_source/t_coffee.sh
 cd ..
 
 echo "Compiling DisEMBL..."