X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.gradle;h=b461247b280775a5cb46718b2bd5063a8a596e41;hb=eaace91e0394510ab4053b0884804cd2200c9ef6;hp=7cdadc1015bd2b67c1e871408e37e6b279279ad5;hpb=2d28597b643c287eee1f495e56c3529be05bbc5d;p=jalview.git

diff --git a/build.gradle b/build.gradle
index 7cdadc1..b461247 100644
--- a/build.gradle
+++ b/build.gradle
@@ -83,6 +83,12 @@ ext {
   } else {
     println("HEADLESS BUILD")
   }
+  
+  J2S_ENABLED = (project.hasProperty('j2s.compiler.status') && project['j2s.compiler.status'] != null && project['j2s.compiler.status'] == "enable")
+  if (J2S_ENABLED) {
+    println("J2S ENABLED")
+  }
+  
   /* *-/
   System.properties.sort { it.key }.each {
     key, val -> println("SYSTEM PROPERTY ${key}='${val}'")
@@ -117,7 +123,7 @@ ext {
   getdownDir = string("")
   reportRsyncCmd = false
   buildDist = true
-  buildProperties = build_properties_file
+  buildProperties = string("${resourceDir}/${build_properties_file}")
   getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher}")
   switch (CHANNEL) {
 
@@ -127,7 +133,7 @@ ext {
     getdown_channel_name = string("${bamboo_planKey}/${JAVA_VERSION}")
     getdown_app_base = string("${bamboo_channelbase}/${bamboo_planKey}${bamboo_getdown_channel_suffix}/${JAVA_VERSION}")
     getdown_app_dir = getdown_app_dir_alt
-    buildProperties = string("${classesDir}/${build_properties_file}")
+    buildProperties = string("${resourceDir}/${build_properties_file}")
     break
 
     case "RELEASE":
@@ -135,7 +141,7 @@ ext {
     getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
     getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
     getdown_app_dir = getdown_app_dir_release
-    buildProperties = string("${classesDir}/${build_properties_file}")
+    buildProperties = string("${resourceDir}/${build_properties_file}")
     reportRsyncCommand = true
     break
 
@@ -149,7 +155,7 @@ ext {
       exit
     } else {
       packageDir = string("${ARCHIVEDIR}/${packageDir}")
-      buildProperties = string("${ARCHIVEDIR}/${classes_dir}/${build_properties_file}")
+      buildProperties = string("${ARCHIVEDIR}/${resource_dir}/${build_properties_file}")
       buildDist = false
     }
     reportRsyncCommand = true
@@ -165,7 +171,7 @@ ext {
       exit
     } else {
       packageDir = string("${ARCHIVEDIR}/${packageDir}")
-      buildProperties = string("${ARCHIVEDIR}/${classes_dir}/${build_properties_file}")
+      buildProperties = string("${ARCHIVEDIR}/${resource_dir}/${build_properties_file}")
       buildDist = false
     }
     reportRsyncCommand = true
@@ -177,7 +183,7 @@ ext {
     getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
     getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
     getdown_app_dir = getdown_app_dir_alt
-    buildProperties = string("${classesDir}/${build_properties_file}")
+    buildProperties = string("${resourceDir}/${build_properties_file}")
     reportRsyncCommand = true
     break
 
@@ -186,7 +192,7 @@ ext {
     getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
     getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
     getdown_app_dir = getdown_app_dir_alt
-    buildProperties = string("${classesDir}/${build_properties_file}")
+    buildProperties = string("${resourceDir}/${build_properties_file}")
     reportRsyncCommand = true
     break
 
@@ -195,14 +201,14 @@ ext {
     getdownDir = string("${getdown_channel_name}/${JAVA_VERSION}")
     getdown_app_base = string("${getdown_channel_base}/${getdownDir}")
     getdown_app_dir = getdown_app_dir_alt
-    buildProperties = string("${classesDir}/${build_properties_file}")
+    buildProperties = string("${resourceDir}/${build_properties_file}")
     reportRsyncCommand = true
     break
 
     case "LOCAL":
     getdown_app_base = file(getdownWebsiteDir).toURI().toString()
     getdown_app_dir = getdown_app_dir_alt
-    buildProperties = string("${classesDir}/${build_properties_file}")
+    buildProperties = string("${resourceDir}/${build_properties_file}")
     getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher_local}")
     break
 
@@ -431,6 +437,9 @@ eclipse {
         def removeTheseToo = []
         HashMap<String, Boolean> alreadyAddedSrcPath = new HashMap<>();
         cp.entries.each { entry ->
+          // This conditional removes all src classpathentries that a) have already been added or b) aren't "src" or "test".
+          // e.g. this removes the resources dir being copied into bin/main, bin/test AND bin/clover
+          // we add the resources and help/help dirs in as libs afterwards (see below)
           if (entry.kind == 'src') {
             if (alreadyAddedSrcPath.getAt(entry.path) || !(entry.path == bareSourceDir || entry.path == bareTestSourceDir)) {
               removeTheseToo += entry
@@ -438,6 +447,7 @@ eclipse {
               alreadyAddedSrcPath.putAt(entry.path, true)
             }
           }
+
         }
         cp.entries.removeAll(removeTheseToo)
 
@@ -454,8 +464,8 @@ eclipse {
         sourceSets.main.compileClasspath.findAll { it.name.endsWith(".jar") }.each {
           //don't want to add outputDir as eclipse is using its own output dir in bin/main
           if (it.isDirectory() || ! it.exists()) {
-            // don't add dirs to classpath
-            return
+            // don't add dirs to classpath, especially if they don't exist
+            return false // groovy "continue" in .any closure
           }
           def itPath = it.toString()
           if (itPath.startsWith("${jalviewDirAbsolutePath}/")) {
@@ -527,7 +537,8 @@ eclipse {
   if (IN_ECLIPSE) {
     // Don't want these to be activated if in headless build
     synchronizationTasks "eclipseSynchronizationTask"
-    autoBuildTasks "eclipseAutoBuildTask"
+    //autoBuildTasks "eclipseAutoBuildTask"
+
   }
 }
 
@@ -659,6 +670,8 @@ task setGitVals {
 
 
 task createBuildProperties(type: WriteProperties) {
+  group = "build"
+  description = "Create the ${buildProperties} file"
   dependsOn setGitVals
   inputs.dir(sourceDir)
   inputs.dir(resourceDir)
@@ -674,6 +687,13 @@ task createBuildProperties(type: WriteProperties) {
 }
 
 
+clean {
+  doFirst {
+    delete buildProperties
+  }
+}
+
+
 task cleanBuildingHTML(type: Delete) {
   doFirst {
     delete buildingHTML
@@ -769,6 +789,7 @@ task syncLib(type: Sync) {
 
 
 task syncResources(type: Sync) {
+  dependsOn createBuildProperties
   from resourceDir
   include "**/*.*"
   into "${classesDir}"
@@ -880,6 +901,7 @@ task cleanPackageDir(type: Delete) {
   }
 }
 
+
 jar {
   dependsOn linkCheck
   dependsOn buildIndices
@@ -1829,7 +1851,12 @@ DEBUG: ${eclipseDebug}
     if (stdout.toString().contains("Error processing ")) {
       // j2s did not complete transpile
       //throw new TaskExecutionException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
-      throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      if (jalviewjs_ignore_transpile_errors.equals("true")) {
+        println("IGNORING TRANSPILE ERRORS")
+        println("See eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      } else {
+        throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      }
     }
   }
 
@@ -1950,7 +1977,7 @@ task jalviewjsBuildAllCores {
 
     def file = hash['file']
     if (! file.exists()) {
-      println("...classlist file '"+file.getPath()+"' does not exist, skipping")
+      //println("...classlist file '"+file.getPath()+"' does not exist, skipping")
       return false // this is a "continue" in groovy .each closure
     }
     def name = hash['name']
@@ -2023,7 +2050,8 @@ task jalviewjsBuildAllCores {
     'list': allJsFiles,
     'name': allClasslistName
   ]
-  jalviewjsCoreClasslists += allClasslist
+  // not including this version of "all" core at the moment
+  //jalviewjsCoreClasslists += allClasslist
   inputs.files(allClasslist['list'])
   outputs.file(allClasslist['jsfile'])
   outputs.file(allClasslist['zjsfile'])
@@ -2160,12 +2188,19 @@ task jalviewjsBuildSite {
 }
 
 
-task cleanJalviewjsSite {
+task cleanJalviewjsTransferSite {
   doFirst {
     delete "${jalviewDir}/${jalviewjsTransferSiteJsDir}"
     delete "${jalviewDir}/${jalviewjsTransferSiteLibDir}"
     delete "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}"
     delete "${jalviewDir}/${jalviewjsTransferSiteCoreDir}"
+  }
+}
+
+
+task cleanJalviewjsSite {
+  dependsOn cleanJalviewjsTransferSite
+  doFirst {
     delete "${jalviewDir}/${jalviewjsSiteDir}"
   }
 }
@@ -2260,21 +2295,26 @@ task cleanJalviewjsAll {
 
 task jalviewjsIDE_checkJ2sPlugin {
   group "00 JalviewJS in Eclipse"
-  description "Compare the swingjs/net.sf.j2s.core.jar file with the Eclipse pluing version"
+  description "Compare the swingjs/net.sf.j2s.core.jar file with the Eclipse IDE's plugin version (found in the 'dropins' dir)"
 
   doFirst {
     def j2sPlugin = string("${jalviewDir}/${jalviewjs_j2s_plugin}")
     def j2sPluginFile = file(j2sPlugin)
+    def copyPlugin = jalviewjs_eclipseIDE_auto_copy_j2s_plugin == "true"
     def eclipseHome = System.properties["eclipse.home.location"]
+    def doCopy = false
     if (eclipseHome == null || ! IN_ECLIPSE) {
       throw new StopExecutionException("Cannot find running Eclipse home from System.properties['eclipse.home.location']. Skipping J2S Plugin Check.")
     }
     def eclipseJ2sPlugin = "${eclipseHome}/dropins/${j2sPluginFile.getName()}"
     def eclipseJ2sPluginFile = file(eclipseJ2sPlugin)
     if (!eclipseJ2sPluginFile.exists()) {
-      def msg = "Eclipse J2S Plugin is not installed"
-      println(msg)
-      throw new GradleException(msg)
+      def msg = "Eclipse J2S Plugin is not installed (could not find '${eclipseJ2sPlugin}')"
+      System.err.println(msg)
+      if (! copyPlugin) {
+        throw new GradleException(msg)
+      }
+      doCopy = true
     }
 
     def digest = MessageDigest.getInstance("MD5")
@@ -2286,12 +2326,26 @@ task jalviewjsIDE_checkJ2sPlugin {
     def eclipseJ2sPluginMd5 = new BigInteger(1, digest.digest()).toString(16).padLeft(32, '0')
      
     if (j2sPluginMd5 != eclipseJ2sPluginMd5) {
-      def msg = "Eclipse J2S Plugin is different to '${j2sPlugin}'"
-      println(msg)
-      throw new GradleException(msg)
+      def msg = "WARNING! Eclipse J2S Plugin '${eclipseJ2sPlugin}' is different to this commit's version '${j2sPlugin}'"
+      System.err.println(msg)
+      if (! copyPlugin) {
+        throw new StopExecutionException(msg)
+      }
+      doCopy = true
     }
 
-    println("Eclipse J2S Plugin is same as '${j2sPlugin}'")
+    if (doCopy) {
+      def msg = "WARNING! Auto-copying this commit's j2s plugin version '${j2sPlugin}' to Eclipse J2S Plugin '${eclipseJ2sPlugin}'\n         May require an Eclipse restart"
+      println(msg)
+      copy {
+        from j2sPlugin
+        eclipseJ2sPluginFile.getParentFile().mkdirs()
+        into eclipseJ2sPluginFile.getParent()
+      }
+    } else {
+      def msg = "Eclipse J2S Plugin is the same as '${j2sPlugin}' (this is good)"
+      println(msg)
+    }
   }
 }
 
@@ -2310,9 +2364,7 @@ task jalviewjsIDE_SyncCore {
 }
 
 
-task jalviewjsIDE_PrepareSite {
-  group "00 JalviewJS in Eclipse"
-  description "Sync libs and resources to site dir, but not closure cores"
+task jalviewjsIDE_SyncSiteAll {
   dependsOn jalviewjsSyncAllLibs
   dependsOn jalviewjsSyncResources
   dependsOn jalviewjsSyncSiteResources
@@ -2320,6 +2372,18 @@ task jalviewjsIDE_PrepareSite {
 }
 
 
+cleanJalviewjsTransferSite.mustRunAfter jalviewjsIDE_SyncSiteAll
+
+
+task jalviewjsIDE_PrepareSite {
+  group "00 JalviewJS in Eclipse"
+  description "Sync libs and resources to site dir, but not closure cores"
+
+  dependsOn jalviewjsIDE_SyncSiteAll
+  dependsOn cleanJalviewjsTransferSite
+}
+
+
 task jalviewjsIDE_AssembleSite {
   group "00 JalviewJS in Eclipse"
   description "Assembles unzipped supporting zipfiles, resources, site resources and closure cores into the Eclipse transpiled site"
@@ -2341,16 +2405,22 @@ task jalviewjsIDE_Server {
 }
 
 
-// buildship runs this at import
+// buildship runs this at import or gradle refresh
 task eclipseSynchronizationTask {
   //dependsOn eclipseSetup
-  dependsOn jalviewjsIDE_j2sFile
+  dependsOn createBuildProperties
+  if (J2S_ENABLED) {
+    dependsOn jalviewjsIDE_j2sFile
+    dependsOn jalviewjsIDE_checkJ2sPlugin
+    dependsOn jalviewjsIDE_PrepareSite
+  }
 }
 
 
-// buildship runs this at build time
+// buildship runs this at build time or project refresh
 task eclipseAutoBuildTask {
-  dependsOn jalviewjsIDE_PrepareSite
+  //dependsOn jalviewjsIDE_checkJ2sPlugin
+  //dependsOn jalviewjsIDE_PrepareSite
 }