X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=build.xml;h=b3d0a836f0770b53b3e3d91d107ad1ea0201e900;hb=0d83689f1222cdf55789422e6528f25ffa24ffc2;hp=fd76bb2e17bd61a65f64cc8a195ee6f11f6aaff6;hpb=ca966f7a8854a0b703fed2f7b3116838d56b9621;p=vamsas.git

diff --git a/build.xml b/build.xml
index fd76bb2..b3d0a83 100644
--- a/build.xml
+++ b/build.xml
@@ -1,42 +1,67 @@
 <?xml version="1.0"?>
+<!--
+   * This file is part of the Vamsas Client version 0.2. 
+   * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+   *  Andrew Waterhouse and Dominik Lindner.
+   * 
+   * Earlier versions have also been incorporated into Jalview version 2.4 
+   * since 2008, and TOPALi version 2 since 2007.
+   * 
+   * The Vamsas Client is free software: you can redistribute it and/or modify
+   * it under the terms of the GNU Lesser General Public License as published by
+   * the Free Software Foundation, either version 3 of the License, or
+   * (at your option) any later version.
+   *  
+   * The Vamsas Client is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU Lesser General Public License for more details.
+   * 
+   * You should have received a copy of the GNU Lesser General Public License
+   * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <project name="vamsas-client" default="build" basedir=".">
 
 	<target name="init">
-		<property name="libDir" value="lib"/>
-		<property name="toolsDir" value="tools"/>
-		<property name="resourceDir" value="resources"/>
+		<!--<property name="target1.4" value="true"> -->
+		<property name="libDir" value="lib" />
+		<property name="toolsDir" value="tools" />
+		<property name="resourceDir" value="resources" />
 		<property name="sourceDir" value="src" />
 		<property name="outputDir" value="classes" />
 		<property name="packageDir" value="packages" />
 		<property name="vamsasClient.jar" value="vamsas-client.jar" />
+		<property name="vamsasClientDoc.jar" value="vamsas-client-docs.jar" />
+		<property name="vamsasClientSource.jar" value="vamsas-client-src-doc.jar" />
+		<property name="vamsasSchemaDocs.jar" value="vamsas-schema-and-doc.jar" />
 		<property name="vamsas.schema" value="schemas/vamsas.xsd" />
 		<property name="vamsas.doc.schema" value="schemas/vamsasDocument.xsd" />
-		<property name="vamsas.schema.package" value="org.vamsas.objects.core" />
-		<property name="vamsas.schema.package.src" value="org/vamsas/objects/core" />
-		<property name="vamsas.schema.sourcegen.properties" value="schemas/castorbuilder.properties"/>
+		<property name="vamsas.schema.package" value="uk.ac.vamsas.objects.core" />
+		<property name="vamsas.schema.package.src" value="uk/ac/vamsas/objects/core" />
+		<property name="vamsas.schema.sourcegen.properties" value="schemas/castorbuilder.properties" />
 		<path id="castor.classpath">
 			<fileset dir="tools">
-				<include name="*.jar"/>
-				<include name="**/*.jar"/>
+				<include name="*.jar" />
+				<include name="**/*.jar" />
 			</fileset>
 			<fileset dir="lib">
-				<include name="*.jar"/>
-				<include name="**/*.jar"/>
+				<include name="*.jar" />
+				<include name="**/*.jar" />
 			</fileset>
 		</path>
-			
+
 		<!--
 		Build classpath
 		-->
 		<path id="build.classpath">
 			<fileset dir="${toolsDir}">
-				<include name="*.jar"/>
-				<include name="**/*.jar"/>
+				<include name="*.jar" />
+				<include name="**/*.jar" />
 			</fileset>
 
 			<fileset dir="${libDir}">
-				<include name="*.jar"/>
-				<include name="**/*.jar"/>
+				<include name="*.jar" />
+				<include name="**/*.jar" />
 			</fileset>
 			<!-- 		path refid="axis.classpath"  -->
 		</path>
@@ -44,86 +69,148 @@
 	<target name="cleancoresource" depends="init" description="Clean automatically generated packages">
 		<delete>
 			<fileset dir="${sourceDir}/${vamsas.schema.package.src}">
-				<include name="*.java"/>
+				<include name="*.java" />
+				<include name="descriptors/*.java" />
 			</fileset>
 		</delete>
 	</target>
 	<target name="makecoresource" depends="init, cleancoresource" description="Generate Java source files from XSD.">
-	<taskdef name="castor-srcgen"
-		  classname="org.exolab.castor.tools.ant.taskdefs.CastorSourceGenTask"
-	      classpathref="castor.classpath" />
-	<!-- Should apply this to every schema file in ${vamsas.schemas} directory -->
-		<castor-srcgen file="${vamsas.schema}"
-	      todir="${sourceDir}"
-	      package="${vamsas.schema.package}"
-	      warnings="false" 
-		  nodesc="false"
-		properties="${vamsas.schema.sourcegen.properties}"
-	/>	
-		<castor-srcgen file="${vamsas.doc.schema}"
-			      todir="${sourceDir}"
-			      package="${vamsas.schema.package}"
-			      warnings="false" 
-				  nodesc="false"
-				properties="${vamsas.schema.sourcegen.properties}"
-			/>	
+		<taskdef name="castor-srcgen" classname="org.castor.anttask.CastorCodeGenTask" classpathref="castor.classpath" />
+		<!-- Should apply this to every schema file in ${vamsas.schemas} directory -->
+		<castor-srcgen file="${vamsas.schema}" todir="${sourceDir}" package="${vamsas.schema.package}" warnings="true" nodesc="false" properties="${vamsas.schema.sourcegen.properties}" />
+		<castor-srcgen file="${vamsas.doc.schema}" todir="${sourceDir}" package="${vamsas.schema.package}" warnings="true" nodesc="false" properties="${vamsas.schema.sourcegen.properties}" />
 	</target>
 	<target name="prepare" depends="init">
-		<mkdir dir="${packageDir}"/>
-		<mkdir dir="${outputDir}"/>
+		<mkdir dir="${packageDir}" />
+		<mkdir dir="${outputDir}" />
 		<copy todir="${outputDir}">
 			<fileset dir="${resourceDir}" />
+			<fileset dir="${basedir}">
+				<include name="LICENS*" />
+				<include name="COPYING*" />
+				<include name="CONTRIB" />
+				<include name="README" />
+			</fileset>
 		</copy>
 	</target>
 	<target name="clean" depends="init">
 		<delete>
 			<fileset dir="${outputDir}">
-				<include name="*"/>
-				<include name="*.*"/>
-				<include name="**/*"/>
-				<include name="**/*.*"/>
+				<include name="*" />
+				<include name="*.*" />
+				<include name="**/*" />
+				<include name="**/*.*" />
 			</fileset>
 		</delete>
-		<delete dir="${axisbuild}"/>
+		<delete dir="${axisbuild}" />
 		<!--	<ant dir="test" antfile="build.xml" target="clean"
 inheritRefs="true"/> -->
 	</target>
 	<target name="realclean" depends="init, clean">
-		<delete dir="${packageDir}"/>
+		<delete dir="${packageDir}" />
 	</target>
 	<target name="distclean" depends="init, realclean">
-		<echo message="REMOVING ALL BACKUP/AUTOSAVES!"/>
+		<echo message="REMOVING ALL BACKUP/AUTOSAVES!" />
 		<delete>
 			<fileset dir=".">
-				<include name="#*#"/>
-				<include name="#*.*#"/>
-				<include name="**/#*#"/>
-				<include name="**/#*.*#"/>
-				<include name="*~"/>
-				<include name="*.*~"/>
-				<include name="**/*~"/>
-				<include name="**/*.*~"/>
+				<include name="#*#" />
+				<include name="#*.*#" />
+				<include name="**/#*#" />
+				<include name="**/#*.*#" />
+				<include name="*~" />
+				<include name="*.*~" />
+				<include name="**/*~" />
+				<include name="**/*.*~" />
 			</fileset>
 		</delete>
 	</target>
-
-	<target name="build" depends="init, prepare">
-		<!-- not efficient yet. : use excludes="*/localtest/*.java" if local tests are not building -->
-		<javac classpathref="build.classpath" debug="on" srcdir="${sourceDir}" destdir="${outputDir}" deprecation="on" >
-	<exclude name="uk/ac/ebi/msd/vamsas/**"/>
+	<target name="build1.4" depends="init,prepare" if="target1.4">
+		<javac classpathref="build.classpath" debug="on" srcdir="${sourceDir}" destdir="${outputDir}" deprecation="on" source="1.4" target="1.4">
+			<exclude name="uk/ac/ebi/msd/vamsas/**" />
+			<exclude name="uk/ac/vamsas/test/document/SAXTreeViewer.*"/>
 		</javac>
 	</target>
-	<target name="jar" depends="build">
+	<target name="build1.5" depends="init,prepare" unless="target1.4">
+		<javac classpathref="build.classpath" debug="on" srcdir="${sourceDir}" destdir="${outputDir}" deprecation="on" source="1.5" target="1.5">
+			<exclude name="uk/ac/ebi/msd/vamsas/**" />
+		</javac>
+	</target>
+	<target name="build" depends="build1.4,build1.5">
+		<echo message="Finished building" />
+	</target>
+	<target name="jar" depends="build, javadoc">
 		<jar destfile="${packageDir}/${vamsasClient.jar}">
-		<fileset dir="${outputDir}">
-	          <exclude name="cache*/**"/>
-	          <include name="**/*" />
-	          <exclude name="*.jar.*" />
-	          <exclude name="**/*.jar" />
-	          <exclude name="**/*.jar.*" />
-		</fileset>
+			<fileset dir="${outputDir}">
+				<exclude name="cache*/**" />
+				<include name="**/*" />
+				<exclude name="*.jar.*" />
+				<exclude name="**/*.jar" />
+				<exclude name="**/*.jar.*" />
+				<exclude name="*.java" />
+				<exclude name="**/*.java" />
+				<exclude name="uk/*.class" />
+				<exclude name="log4j.properties" />
+				<exclude name="commons-logging.properties" />
+			</fileset>
+		</jar>
+		<jar destfile="${packageDir}/${vamsasClientDoc.jar}">
+			<fileset dir="docs/api">
+				<include name="**/*" />
+			</fileset>
+			<fileset dir="${basedir}">
+				<include name="README" />
+				<include name="CONTRIB" />
+				<include name="LICEN*" />
+				<include name="COPYING*" />
+			</fileset>
+		</jar>
+		<jar destfile="${packageDir}/${vamsasSchemaDocs.jar}">
+			<fileset dir="${basedir}/schemas">
+				<include name="*.xsd" />
+			</fileset>
+			<fileset dir="${basedir}/docs/schema">
+				<include name="**/*" />
+			</fileset>
+			<fileset dir="${basedir}">
+				<include name="COPYING*" />
+			</fileset>
+		</jar>
+		<jar destfile="${packageDir}/${vamsasClientSource.jar}">
+			<fileset dir="${basedir}">
+				<include name="src/**/*.java" />
+				<include name="src/**/*.cdr" />
+				<exclude name="*~" />
+				<exclude name="**/*.java~" />
+				<include name="resources/**" />
+				<include name="utils/**" />
+				<include name="tools/**" />
+				<include name="schemas/**" />
+				<include name="test" />
+				<include name="docs/**" />
+				<include name="tools/**" />
+				<include name="lib/**" />
+				<include name="README" />
+				<include name="CONTRIB" />
+				<include name="LICEN*" />
+				<include name="COPYING*" />
+				<include name="*.eclipse*" />
+				<include name="*.launch" />
+				<include name="build.xml" />
+			</fileset>
 		</jar>
 	</target>
+
+	<target name="javadoc" depends="init">
+		<javadoc destdir="docs/api" classpathref="build.classpath" author="true" version="true" use="true">
+			<fileset dir="${sourceDir}" defaultexcludes="yes">
+				<exclude name="**/.castor.cdr" />
+				<!-- this was for the old ebi packages.
+      	<exclude name="uk/**"/>
+      	<exclude name="uk/*.java"/> -->
+			</fileset>
+		</javadoc>
+	</target>
+
 </project>