X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=conf%2FExecutable.properties;h=7471956543cdcd7304e68d883957cea4dbcb37bf;hb=35947b9e0b6ae1be74f17d15cd6a65ceadc6d310;hp=5433d777e92c1c5c26eb2c87f8f95ef8c720662a;hpb=e7bf02d1c203bc8d88b9095e89d5ca6cce21a882;p=jabaws.git

diff --git a/conf/Executable.properties b/conf/Executable.properties
index 5433d77..7471956 100644
--- a/conf/Executable.properties
+++ b/conf/Executable.properties
@@ -72,6 +72,17 @@ clustalw.parameters.file=conf/settings/ClustalParameters.xml
 #clustalw.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M
 
 
+######                 CLUSTAL OMEGA CONFIGURATION                ######
+local.clustalo.bin.windows=binaries/windows/clustalo/clustalo.exe
+local.clustalo.bin=binaries/src/clustalo/clustalo
+#cluster.clustalo.bin=/homes/pvtroshin/workspace/jaba2/binaries/src/clustalo/clustalo
+## This parameters specifies the directory where the matrices files are stored   
+clustalo.presets.file=conf/settings/ClustalPresets.xml
+clustalo.parameters.file=conf/settings/ClustalParameters.xml
+#clustalo.limits.file=conf/settings/ClustalLimits.xml
+#clustalo.cluster.settings=-l h_cpu=24:00:00 -l h_vmem=6000M -l ram=6000M
+
+
 ######                 MUSCLE CONFIGURATION                 ######
 local.muscle.bin.windows=binaries/windows/muscle.exe
 local.muscle.bin=binaries/src/muscle/muscle