X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=conf%2Fsettings%2FMSAprobsParameters.xml;fp=conf%2Fsettings%2FMSAprobsParameters.xml;h=cc4227e0fc141cfe061bcead53dd242d1ccedfe9;hb=b05d1f756857fa5e4f67ad00d51d0a7ecbcbb505;hp=6ace32ca5b4c27e571f40ad69b8bd94fbd76ad26;hpb=eff4a98cfd1cbfb97694cb73a6d6f124b0af2d1e;p=jabaws.git

diff --git a/conf/settings/MSAprobsParameters.xml b/conf/settings/MSAprobsParameters.xml
index 6ace32c..cc4227e 100644
--- a/conf/settings/MSAprobsParameters.xml
+++ b/conf/settings/MSAprobsParameters.xml
@@ -29,7 +29,6 @@
             passes of consistency transformation
         </description>
         <optionNames>-c</optionNames>
-        <optionNames>--consistency</optionNames>
         <furtherDetails>prog_docs/msaprobs.txt</furtherDetails>
         <defaultValue>2</defaultValue>
         <validValue>
@@ -45,7 +44,6 @@
                       number of passes of iterative-refinement
         </description>
         <optionNames>-ir</optionNames>
-        <optionNames>--iterative-refinement</optionNames>
         <furtherDetails>prog_docs/msaprobs.txt</furtherDetails>
         <defaultValue>10</defaultValue>
         <validValue>