X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=datadb%2Fcompbio%2Fcassandra%2FCassandraNewTableWriter.java;fp=datadb%2Fcompbio%2Fcassandra%2FCassandraNewTableWriter.java;h=3b6c741908280d32ba01d257ffb4f65eaf77ec9a;hb=9bb6ee99ca7f738fac1087190b5481b8fe6e8d9f;hp=0d68b1acfcf40bb73437c08b25a4d071bf3c3e9a;hpb=2e3f6b76be585306f1003d849831840c0adb3360;p=proteocache.git

diff --git a/datadb/compbio/cassandra/CassandraNewTableWriter.java b/datadb/compbio/cassandra/CassandraNewTableWriter.java
index 0d68b1a..3b6c741 100644
--- a/datadb/compbio/cassandra/CassandraNewTableWriter.java
+++ b/datadb/compbio/cassandra/CassandraNewTableWriter.java
@@ -2,17 +2,15 @@ package compbio.cassandra;
 
 import java.util.Calendar;
 import java.util.Date;
+import java.util.List;
 
 import org.apache.log4j.Logger;
 
 import com.datastax.driver.core.Row;
 import com.datastax.driver.core.Session;
 import com.datastax.driver.core.ResultSet;
-import com.datastax.driver.core.PreparedStatement;
-import com.datastax.driver.core.BoundStatement;
 import com.datastax.driver.core.exceptions.QueryExecutionException;
 
-import compbio.engine.ProteoCachePropertyHelperManager;
 import compbio.cassandra.CassandraNativeConnector;
 
 public class CassandraNewTableWriter {
@@ -46,6 +44,40 @@ public class CassandraNewTableWriter {
 	}
 
 	/*
+	 * update programme name and version
+	 */
+	public void FillNewParameter() {
+		System.out.println("Updating....");
+
+		final long StartTime = System.currentTimeMillis();
+		long erldate = CassandraNativeConnector.getEarliestDateInDB();
+		Calendar runnicCal = Calendar.getInstance();
+		runnicCal.setTime(new Date(erldate));
+		Calendar endcal = Calendar.getInstance();
+		long endTime = endcal.getTime().getTime();
+		for (Date date = runnicCal.getTime(); date.getTime() < endTime; runnicCal.add(Calendar.DATE, 1), date = runnicCal.getTime()) {
+			try {
+				String com = "SELECT JobID, Protein FROM ProteinData WHERE jobtime = " + date.getTime() + ";";
+				System.out.println(com);
+				ResultSet results = session.execute(com);
+				if (results == null || results.isExhausted())
+					continue;
+				List<Row> rows = results.all();
+				System.out.println(rows.size());
+				for (Row r : rows) {
+					session.execute("UPDATE  ProteinLog SET ProgramName = 'Jpred', ProgramVersion = '3.0.1' WHERE JobID = '"
+							+ r.getString("JobID") + "';");
+					session.execute("UPDATE  JpredArchive SET ProgramName = 'Jpred', ProgramVersion = '3.0.1' WHERE JobID = '"
+							+ r.getString("JobID") + "';");
+				}
+			} catch (QueryExecutionException e) {
+				e.printStackTrace();
+			}
+		}
+		System.out.println("Table ProteinLog filled: total time is " + (System.currentTimeMillis() - StartTime) + " msec");
+	}
+
+	/*
 	 * fill new table
 	 */
 	public void FillNewTable() {