X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=datadb%2Fcompbio%2Fcassandra%2FProteinBean.java;fp=datadb%2Fcompbio%2Fcassandra%2FProteinBean.java;h=0000000000000000000000000000000000000000;hb=9bb6ee99ca7f738fac1087190b5481b8fe6e8d9f;hp=80f111bea773e1fa29dac2655c2751797140b755;hpb=2e3f6b76be585306f1003d849831840c0adb3360;p=proteocache.git

diff --git a/datadb/compbio/cassandra/ProteinBean.java b/datadb/compbio/cassandra/ProteinBean.java
deleted file mode 100644
index 80f111b..0000000
--- a/datadb/compbio/cassandra/ProteinBean.java
+++ /dev/null
@@ -1,59 +0,0 @@
-package compbio.cassandra;
-
-import java.util.ArrayList;
-import java.util.LinkedHashMap;
-import java.util.List;
-import java.util.Map;
-
-public class ProteinBean implements PredictionIndex{
-	private String sequence;
-	private List<String> jobid;
-	private LinkedHashMap<String,String> predictions;
-	private List<String> subProt;		// protein sequence divided by several parts for highlighting the particular part
-	private int size;
-	
-	public ProteinBean (String seq, Map<String,String> pred) {
-		this.sequence = seq;
-		this.predictions = new LinkedHashMap<String,String>();	
-		this.jobid = new ArrayList<String>();
-		setPredictions(pred);
-	}
-	
-	public void setPredictions(Map<String,String> pred) {
-		if (predictions == null)
-			predictions = new LinkedHashMap<String,String>();	
-		for (String index : predIndex) {
-			this.predictions.put(index, pred.get(index));
-		}	
-		this.size = predictions.size();
-	}
-	
-	public String getSequence () {
-		return sequence;
-	}
-	
-	public List<String> getJobid () {
-		return jobid;
-	}
-	
-	public void setJobid (String id) {
-		this.jobid.add(id);
-	}
-
-	public int getSize () {
-		return size;
-	}
-	
-	public LinkedHashMap<String,String> getPredictions () {
-		return predictions;
-	}
-	
-	public void setSubProt(List<String> subProt) {
-		this.subProt = subProt;
-	}
-
-	public List<String> getSubProt() {
-		return subProt;
-	}
-
-}