X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FappletParameters.html;fp=examples%2FappletParameters.html;h=7959c3ae3dc1594f3f5cc66ad03a8e37f10917df;hb=2595e9d4ee0dbbd3406a98c4e49a61ccde806479;hp=cc95ecb808876d00c2839cd9a48df2dd179872f6;hpb=e20075ba805d744d7cc4976e2b8d5e5840fb0a8d;p=jalview.git
diff --git a/examples/appletParameters.html b/examples/appletParameters.html
index cc95ecb..7959c3a 100644
--- a/examples/appletParameters.html
+++ b/examples/appletParameters.html
@@ -91,8 +91,9 @@ the applet can be interacted with via its
jnetfile |
fileName |
Secondary structure predictions from a Jnet Concise
- file will be added to the first sequence in the alignment. |
+ href="http://www.compbio.dundee.ac.uk/~www-jpred/">JPred Concise
+ file will be added to the first sequence in the alignment.
+ jpredfile can be used interchangeably with this parameter.
PDBfile(x) |
@@ -114,7 +115,7 @@ the applet can be interacted with via its
defaultColour |
One of:
Clustal, Blosum62, % Identity, Hydrophobic, Zappo, Taylor, Helix
- Propensity, Strand Propensity, Turn Propensity, Buried Index, Nucleotide, T-Coffee Scores, RNA Helices |
+ Propensity, Strand Propensity, Turn Propensity, Buried Index, Nucleotide, Purine/Pyrimidine, T-Coffee Scores, RNA Helices
Default is no colour. |