X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2FexampleFeatures.txt;h=27e4d46158a845935222e82188b2c4c9307c7d1b;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=ed69412bfa3bb249ff23c2b687123efc98e91ef7;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git diff --git a/examples/exampleFeatures.txt b/examples/exampleFeatures.txt index ed69412..27e4d46 100755 --- a/examples/exampleFeatures.txt +++ b/examples/exampleFeatures.txt @@ -1,6 +1,6 @@ #------------------------------------------------------------------------------- -# Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) -# Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle +# Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) +# Copyright (C) 2015 The Jalview Authors # # This file is part of Jalview. # @@ -14,6 +14,7 @@ # PURPOSE. See the GNU General Public License for more details. # # You should have received a copy of the GNU General Public License along with Jalview. If not, see . +# The Jalview Authors are detailed in the 'AUTHORS' file. #------------------------------------------------------------------------------- ST-TURN-IIL 705b23 GAMMA-TURN-CLASSIC 788763 @@ -23,7 +24,7 @@ BETA-BULGE 1dc451 Pfam dc206a PHOSPHORYLATION (S) b974a5 PHOSPHORYLATION (Y) 7d3881 -Cath 93b1d2 +Cath 93b1d1 ASX-TURN-IR 4ccc6e BETA-BULGE-LOOP-5 4066da CATMAT-4 4dc465 @@ -43,70 +44,70 @@ BETA-TURN-IIL 8b5b50 ST-MOTIF ac25a1 STARTGROUP uniprot -Iron-sulfur (2Fe-2S) FER_CAPAA -1 39 39 METAL -Iron-sulfur (2Fe-2S) FER_CAPAA -1 44 44 METAL -Iron-sulfur (2Fe-2S) FER_CAPAA -1 47 47 METAL -Iron-sulfur (2Fe-2S) FER_CAPAA -1 77 77 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 39 39 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 44 44 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 47 47 METAL +Iron-sulfur (2Fe-2S) FER_CAPAA -1 77 77 METAL Fer2 Status: True Positive Pfam 8_8 FER_CAPAA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER_CAPAA -1 3 93 Cath -Iron-sulfur (2Fe-2S) FER_CAPAN -1 86 86 METAL -Iron-sulfur (2Fe-2S) FER_CAPAN -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER_CAPAN -1 94 94 METAL -Iron-sulfur (2Fe-2S) FER_CAPAN -1 124 124 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 86 86 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 94 94 METAL +Iron-sulfur (2Fe-2S) FER_CAPAN -1 124 124 METAL Fer2 Status: True Positive Pfam 55_13 FER_CAPAN -1 55 130 Pfam Ferredoxin_fold Status: True Positive FER_CAPAN -1 45 140 Cath -Iron-sulfur (2Fe-2S) FER1_SOLLC -1 86 86 METAL -Iron-sulfur (2Fe-2S) FER1_SOLLC -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER1_SOLLC -1 94 94 METAL -Iron-sulfur (2Fe-2S) FER1_SOLLC -1 124 124 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 86 86 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 94 94 METAL +Iron-sulfur (2Fe-2S) FER1_SOLLC -1 124 124 METAL Fer2 Status: True Positive Pfam 55_13 FER1_SOLLC -1 55 130 Pfam Ferredoxin_fold Status: True Positive FER1_SOLLC -1 45 140 Cath Fer2 Status: True Positive Pfam 55_13 Q93XJ9_SOLTU -1 55 130 Pfam Ferredoxin_fold Status: True Positive Q93XJ9_SOLTU -1 45 140 Cath -Iron-sulfur (2Fe-2S) FER1_PEA -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER1_PEA -1 96 96 METAL -Iron-sulfur (2Fe-2S) FER1_PEA -1 99 99 METAL -Iron-sulfur (2Fe-2S) FER1_PEA -1 129 129 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER1_PEA -1 129 129 METAL Fer2 Status: True Positive Pfam 60_13 FER1_PEA -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER1_PEA -1 50 145 Cath Fer2 Status: True Positive Pfam 63_13 Q7XA98_TRIPR -1 63 138 Pfam Ferredoxin_fold Status: True Positive Q7XA98_TRIPR -1 53 148 Cath -Iron-sulfur (2Fe-2S) FER1_MESCR -1 90 90 METAL -Iron-sulfur (2Fe-2S) FER1_MESCR -1 95 95 METAL -Iron-sulfur (2Fe-2S) FER1_MESCR -1 98 98 METAL -Iron-sulfur (2Fe-2S) FER1_MESCR -1 128 128 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 90 90 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 95 95 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 98 98 METAL +Iron-sulfur (2Fe-2S) FER1_MESCR -1 128 128 METAL Fer2 Status: True Positive Pfam 59_13 FER1_MESCR -1 59 134 Pfam Ferredoxin_fold Status: True Positive FER1_MESCR -1 49 144 Cath -Iron-sulfur (2Fe-2S) FER1_SPIOL -1 89 89 METAL -Iron-sulfur (2Fe-2S) FER1_SPIOL -1 94 94 METAL -Iron-sulfur (2Fe-2S) FER1_SPIOL -1 97 97 METAL -Iron-sulfur (2Fe-2S) FER1_SPIOL -1 127 127 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 89 89 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 94 94 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 97 97 METAL +Iron-sulfur (2Fe-2S) FER1_SPIOL -1 127 127 METAL Fer2 Status: True Positive Pfam 58_13 FER1_SPIOL -1 58 133 Pfam Ferredoxin_fold Status: True Positive FER1_SPIOL -1 48 143 Cath -Iron-sulfur (2Fe-2S) FER3_RAPSA -1 39 39 METAL -Iron-sulfur (2Fe-2S) FER3_RAPSA -1 44 44 METAL -Iron-sulfur (2Fe-2S) FER3_RAPSA -1 47 47 METAL -Iron-sulfur (2Fe-2S) FER3_RAPSA -1 77 77 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 39 39 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 44 44 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 47 47 METAL +Iron-sulfur (2Fe-2S) FER3_RAPSA -1 77 77 METAL Fer2 Status: True Positive Pfam 8_8 FER3_RAPSA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER3_RAPSA -1 3 93 Cath -Iron-sulfur (2Fe-2S) FER_BRANA -1 39 39 METAL -Iron-sulfur (2Fe-2S) FER_BRANA -1 44 44 METAL -Iron-sulfur (2Fe-2S) FER_BRANA -1 47 47 METAL -Iron-sulfur (2Fe-2S) FER_BRANA -1 77 77 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 39 39 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 44 44 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 47 47 METAL +Iron-sulfur (2Fe-2S) FER_BRANA -1 77 77 METAL Fer2 Status: True Positive Pfam 8_8 FER_BRANA -1 8 83 Pfam Ferredoxin_fold Status: True Positive FER_BRANA -1 2 96 Cath -Iron-sulfur (2Fe-2S) FER2_ARATH -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER2_ARATH -1 96 96 METAL -Iron-sulfur (2Fe-2S) FER2_ARATH -1 99 99 METAL -Iron-sulfur (2Fe-2S) FER2_ARATH -1 129 129 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER2_ARATH -1 129 129 METAL Fer2 Status: True Positive Pfam 60_13 FER2_ARATH -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER2_ARATH -1 50 145 Cath Fer2 Status: True Positive Pfam 60_11 Q93Z60_ARATH -1 60 118 Pfam Ferredoxin_fold Status: True Positive Q93Z60_ARATH -1 52 118 Cath -Iron-sulfur (2Fe-2S) FER1_MAIZE -1 91 91 METAL -Iron-sulfur (2Fe-2S) FER1_MAIZE -1 96 96 METAL -Iron-sulfur (2Fe-2S) FER1_MAIZE -1 99 99 METAL -Iron-sulfur (2Fe-2S) FER1_MAIZE -1 129 129 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 91 91 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 96 96 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 99 99 METAL +Iron-sulfur (2Fe-2S) FER1_MAIZE -1 129 129 METAL Fer2 Status: True Positive Pfam 60_13 FER1_MAIZE -1 60 135 Pfam Ferredoxin_fold Status: True Positive FER1_MAIZE -1 50 145 Cath Fer2 Status: True Positive Pfam 52_12 O80429_MAIZE -1 52 127 Pfam