X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fgroovy%2FannotationForSelectedSequence.groovy;h=7cb30828fd669983dd1be229f79aff391f380419;hb=HEAD;hp=f071beb21ec7939d1849787f58f9cc7c0f696662;hpb=d26f07df0b28b692f369ea4d901d834ea55ba786;p=jalview.git diff --git a/examples/groovy/annotationForSelectedSequence.groovy b/examples/groovy/annotationForSelectedSequence.groovy index f071beb..7cb3082 100644 --- a/examples/groovy/annotationForSelectedSequence.groovy +++ b/examples/groovy/annotationForSelectedSequence.groovy @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ // Requested by David M Garcia (v3) // very messy script to output the scores in annotation rows // for the first sequence in a selection on the topmost alignment @@ -11,7 +31,7 @@ import java.awt.datatransfer.StringSelection import static java.awt.Toolkit.* -def curviewport = Jalview.getAlignframes()[Jalview.getAlignframes().length-1].getViewport(); +def curviewport = Jalview.getCurrentAlignFrame().getViewport(); // TSV output by default. // change "\t" to "," to output CSV file