X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fgroovy%2FfeaturesCounter.groovy;h=dc4c97c6a27b2b480103dee4f81d4492de4d8ee0;hb=HEAD;hp=ccbb83079729ab83f80a9a50409ff980448a2878;hpb=e811386cfe6d7ab7d73db56a31ac83732e185861;p=jalview.git diff --git a/examples/groovy/featuresCounter.groovy b/examples/groovy/featuresCounter.groovy index ccbb830..dc4c97c 100644 --- a/examples/groovy/featuresCounter.groovy +++ b/examples/groovy/featuresCounter.groovy @@ -1,3 +1,24 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ + import jalview.workers.AlignmentAnnotationFactory; import jalview.workers.FeatureSetCounterI; @@ -10,7 +31,11 @@ import jalview.workers.FeatureSetCounterI; * * The script only needs to be run once - it will be registered by Jalview * and recalculated automatically when the alignment changes. + * + * Note: The feature api provided by 2.10.2 is not compatible with scripts + * that worked with earlier Jalview versions. Apologies for the inconvenience. */ + def annotator = [ getNames: { ['Phosphorylation', 'Turn'] as String[] },