X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fgroovy%2Fprinttitle.groovy;h=a048d6504ef0cf3118edbb09ebc1d7af3e5d42b0;hb=HEAD;hp=b3387ea4290de48c7eb6cf0e58d7d34fc2f45e84;hpb=ea7b9666447dea727e9d607de3694cfe27bc811e;p=jalview.git diff --git a/examples/groovy/printtitle.groovy b/examples/groovy/printtitle.groovy index b3387ea..a048d65 100644 --- a/examples/groovy/printtitle.groovy +++ b/examples/groovy/printtitle.groovy @@ -1,35 +1,35 @@ /* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors - * + * * This file is part of Jalview. - * + * * Jalview is free software: you can redistribute it and/or - * modify it under the terms of the GNU General Public License + * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. - * - * Jalview is distributed in the hope that it will be useful, but - * WITHOUT ANY WARRANTY; without even the implied warranty - * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. - * + * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ // do something groovy in jalview println "Hello World.\n" -println "First sequence is " + currentAlFrame.viewport.alignment.getSequenceAt(0).getDisplayId(true) +println "First sequence is " + Jalview.getCurrentAlignFrame().viewport.alignment.getSequenceAt(0).getDisplayId(true) def alf = Jalview.getAlignFrames() for (ala in alf) { - // ala is an jalview.gui.AlignFrame object + // ala is an jalview.gui.AlignFrame object println ala.getTitle() // get the parent jalview.datamodel.Alignment from the alignment viewport def alignment = ala.viewport.alignment // get the first sequence from the jalview.datamodel.Alignment object - def seq = alignment.getSequenceAt(0) + def seq = alignment.getSequenceAt(0) } Jalview.quit()