X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Fgroovy%2FremoveFeaturesByGroup.groovy;fp=examples%2Fgroovy%2FremoveFeaturesByGroup.groovy;h=0000000000000000000000000000000000000000;hb=4f77328104498504339216829abf5ea87e2791ec;hp=341e06ffe08ca68130f2c22c04f41a44fe7c6bfe;hpb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;p=jalview.git

diff --git a/examples/groovy/removeFeaturesByGroup.groovy b/examples/groovy/removeFeaturesByGroup.groovy
deleted file mode 100644
index 341e06f..0000000
--- a/examples/groovy/removeFeaturesByGroup.groovy
+++ /dev/null
@@ -1,51 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-import jalview.analysis.*;
-import jalview.datamodel.*;
-import jalview.gui.AlignFrame;
-import jalview.gui.AlignViewport;
-
-def af = Jalview.getAlignFrames();
-
-def todie = "PDBFile"; // about to delete this type of group
-for (ala in af)
-{
-	def al = ala.viewport.alignment.getDataset();
-	if (al!=null)
-	{
-		SequenceI[] seqs = al.getSequencesArray();
-		for (sq in seqs)
-		{
-			if (sq!=null) {
-				SequenceFeature[] sf = sq.getSequenceFeatures();
-				for (sfpos in sf)
-				{
-				    if (sfpos!=null && sfpos.getFeatureGroup().equals(todie))
-					{
-						sq.deleteFeature(sfpos);
-					}
-				}
-			}
-		}
-	}
-}
-	
-