X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fexonerateoutput.gff;fp=examples%2Ftestdata%2Fexonerateoutput.gff;h=0000000000000000000000000000000000000000;hb=4f77328104498504339216829abf5ea87e2791ec;hp=d3b5f9bf2a6cbfecd3a81013b4566e8fd9621e95;hpb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;p=jalview.git

diff --git a/examples/testdata/exonerateoutput.gff b/examples/testdata/exonerateoutput.gff
deleted file mode 100644
index d3b5f9b..0000000
--- a/examples/testdata/exonerateoutput.gff
+++ /dev/null
@@ -1,20 +0,0 @@
-# (exonerate delimits GFF with [START|END] OF GFF DUMP)
-# --- START OF GFF DUMP ---
-#
-#
-##gff-version 2
-##source-version exonerate:protein2genome:local 2.2.0
-##date 2015-01-16
-##type DNA
-#
-#
-# seqname source feature start end score strand frame attributes
-#
-contig_1146	exonerate:protein2genome:local	gene	8534	11269	3652	-	.	gene_id 0 ; sequence DDB_G0269124 ; gene_orientation .
-contig_1146	exonerate:protein2genome:local	cds	8534	11269	.	-	.	
-contig_1146	exonerate:protein2genome:local	exon	8534	11269	.	-	.	insertions 3 ; deletions 6
-#TODO need to understand why GFF features is from 11269 but Align is from 11270
-contig_1146	exonerate:protein2genome:local	similarity	8534	11269	3652	-	.	alignment_id 0 ; Query DDB_G0269124 ; Align 11270 143 120 ; Align 11150 187 282 ; Align 10865 281 888 ; Align 9977 578 1068 ; Align 8909 935 375
-# and a made-up alignment to a sequence in exonerateseqs.fa
-contig_1146	exonerate:protein2genome:local	similarity	8534	11269	3652	-	.	alignment_id 0 ; Query DDB_G0280897 ; Align 11270 143 120 
-# --- END OF GFF DUMP ---