Phyre 2 alignment of FER_CAPAN_1-144 with c1krhA

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1krhA_.16.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1krhA_.16.alig.html;h=fd8f23120fc6f5b3ececc49c8784e43597a07ba5;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1krhA_.16.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1krhA_.16.alig.html new file mode 100644 index 0000000..fd8f231 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1krhA_.16.alig.html @@ -0,0 +1,264 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c1krhA_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.91% Date Wed Jan 4 12:02:18 GMT 2017
Rank 16 Aligned Residues 95
% Identity 25% Template c1krhA_
PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; +PDBTitle: x-ray stucture of benzoate dioxygenase reductase +
Resolution 1.50 Å
Model Dimensions (Å) X:38.410 Y:33.003 Z:27.798 +
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	48	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence	A	S	Y	K	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q	T
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence	S	N	H	Q	V	A	L	Q	F	E	D	G	V	T	R	F	I	C	I	A	Q	G	E	T	L	S	D	A	A	Y	R	Q	Q	I	N	I	P	M	D	C	R	E	G	E	C	G	T	C	R	A	F	C	E	S	G	N	Y	D	M	P
Template Known Secondary structure										T	T	S									T	T										T	T				S		S		S	S	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.

	107					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence	D	.	.	.	.	G	N	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A	E	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence	E	D	N	Y	I	E	D	A	L	T	P	E	E	A	Q	Q	G	Y	V	L	A	C	Q	C	R	P	T	S	D	A	V	F	Q	I	Q	A	S	S	E	V
Template Known Secondary structure	G	G	G	S		T	T	T									T				T	T	T				S	S	S						S	S		T	T	G
Template Predicted Secondary structure
Template SS confidence
	62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.