Phyre 2 alignment of FER_CAPAN_1-144 with c1l6vA

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1l6vA_.42.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1l6vA_.42.alig.html;h=2b4b188b156f07a3428473fbecfde49577a3d2a5;hb=c51dbe7933683b64548f5353e67561d2b5e377f7;hp=0000000000000000000000000000000000000000;hpb=12d4dfa00a5e93ae1de1d8409c6d5ca2bc8af13f;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1l6vA_.42.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1l6vA_.42.alig.html new file mode 100644 index 0000000..2b4b188 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1l6vA_.42.alig.html @@ -0,0 +1,276 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c1l6vA_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.21% Date Wed Jan 4 12:02:18 GMT 2017
Rank 42 Aligned Residues 90
% Identity 19% Template c1l6vA_
PDB info PDB header:electron transport Chain: A: PDB Molecule:adrenodoxin 1; +PDBTitle: structure of reduced bovine adrenodoxin +
Resolution UNK
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	49	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure												.																													.	.	.															.	.	.
Query SS confidence												.																													.	.	.															.	.	.
Query Sequence	S	Y	K	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	.	.	.	A	G	S	C	S	S	C	A	G	K	I	A	G	G	.	.	.
Query Conservation												.																													.	.	.															.	.	.
Alig confidence												.																													.	.	.															.	.	.
Template Conservation
Template Sequence	K	I	T	V	H	F	I	N	R	D	G	E	T	L	T	T	K	G	K	I	G	D	S	L	L	D	V	V	V	Q	N	N	L	D	I	D	G	F	G	A	C	E	G	T	L	A	C	S	T	C	H	L	I	F	E	Q	H	I	F	E
Template Known Secondary structure									S	S	S									T	T			T	T		T					T				T	T	S	S	S	T	T	S	S	S	S		S		S	S		B		T					S
Template Predicted Secondary structure
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.

				102	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.											.																					.	.	.
Query SS confidence	.	.	.											.																					.	.	.
Query Sequence	.	.	.	A	V	D	Q	T	D	G	N	F	L	.	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	.	.	.	V	T	I	E	T	H	K
Query Conservation	.	.	.											.																					.	.	.
Alig confidence	.	.	.											.																					.	.	.
Template Conservation
Template Sequence	K	L	E	A	I	T	D	E	E	N	D	M	L	D	L	A	Y	G	L	T	D	R	S	R	L	G	C	Q	I	C	L	T	K	A	M	D	N	M	T	V	R	V	P	D
Template Known Secondary structure	S										T	T		S	S		T	T		S	S	S					S	S					S	T	T	T	T				B
Template Predicted Secondary structure
Template SS confidence
	66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.