X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1l6vA_.42.alig.txt;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1l6vA_.42.alig.txt;h=8b919db83da5c2edbe328412ae252b0dbbb11e59;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git

diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1l6vA_.42.alig.txt b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1l6vA_.42.alig.txt
new file mode 100644
index 0000000..8b919db
--- /dev/null
+++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1l6vA_.42.alig.txt
@@ -0,0 +1,26 @@
+42 c1l6vA_ Probab=99.21   E-value=1.7e-12  Score=92.45  Aligned_columns=90  Identities=19%
+
+Q ss_pred             EEEEEEEECCC-EEEEEECCCCCHHHHHHHCCCCCEECCC---CCCCCCCCEEEECC---
+Q ss_conf             08999992697-2999967998289999987897000233---78587671799414---
+Q FER_CAPAN_1-14   49 SYKVKLITPDG-PIEFDCPDNVYILDQAEEAGHDLPYSCR---AGSCSSCAGKIAGG---  101 (144)
+Q Consensus        49 ~~~V~~~~~~g-~~~~~~~~~~tiLdaa~~aGi~l~~sCr---~G~CgtC~~~v~~G---  101 (144)
+                      +.+|+|+.++| .++|++++|++|||+++++|+++++.|+   .|.|++|.+.++.+   
+T Consensus         2 kv~it~i~~~G~~~~i~~~~G~tLl~a~~~~gi~~~~~~~cgg~g~c~~~~~~~~~~~~~   61 (106)
+T c1l6vA_           2 KITVHFINRDGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFE   61 (106)
+T ss_dssp             EEEEEECCSSSCCCCEEEETTCCTTCTHHHHTCCCTTSSSTTSSSSCSCSSCBCTHHHHS
+T ss_pred             EEEEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCC
+T ss_conf             699999859998899994699777899997799855555567544010048999568755
+
+
+Q ss_pred             ---CCCCCCCCCC-CHHHHCCCEEEEEEEEECCC---EEEEECC
+Q ss_conf             ---2115666668-97683497599643245067---6999248
+Q FER_CAPAN_1-14  102 ---AVDQTDGNFL-DDDQLEEGWVLTCVAYPQSD---VTIETHK  138 (144)
+Q Consensus       102 ---~v~~~~~~~l-~~~~~~~g~vL~C~s~p~sD---v~Ie~~~  138 (144)
+                         .....+...| ..++..+||+|+||.+...|   ++|.+|+
+T Consensus        62 ~l~~~t~~E~~~L~~~~~~~~~~RLaCQ~~v~~~ldg~~V~iP~  105 (106)
+T c1l6vA_          62 KLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAMDNMTVRVPD  105 (106)
+T ss_dssp             SCCCCCHHHHTTCSSCTTCSSSCCCCSSCCCCSTTTTEEEBCCC
+T ss_pred             CCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEECCC
+T ss_conf             67899868988720102789973559877886655827997468
+
+