X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1rm6F_.55.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1rm6F_.55.alig.html;h=e72da77c3c8e4b1ea790f175ae99804d05ed5937;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1rm6F_.55.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1rm6F_.55.alig.html new file mode 100644 index 0000000..e72da77 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1rm6F_.55.alig.html @@ -0,0 +1,203 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c1rm6F_ + + + + + + + + + + +
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Return to main resultsRetrieve Phyre Job Id +
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Job DescriptionFER_CAPAN_1-144
Confidence97.94%DateWed Jan 4 12:02:18 GMT 2017
Rank55Aligned Residues48
% Identity27%Templatec1rm6F_
PDB infoPDB header:oxidoreductaseChain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit; +PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica +
Resolution1.60 Å
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  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment
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  51........60.........70.........80.........90........
Predicted Secondary structure 
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Query SS confidence 
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Query Sequence KVKLITPDGPIEFDCPDNVYILDQAEEA.GH.DLPYSCRAGSCSSCAGKI
Query Conservation  
      
          
  
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Alig confidence 
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Template Conservation  
   
    
 
 
   
 
    
 
 
  
 
Template Sequence ILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV
Template Known Secondary structure TTTT
BTT
TTS
SSSSSS
TT
Template Predicted Secondary structure 
Template SS confidence 
  4.....10.........20.........30.........40.........50...
 
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Download:Text versionFASTA version

No model constructed - rank, confidence too low

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Phyre is for non-commercial use only

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Commercial users please contact Michael Sternberg

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols +10, 845-858 (2015) + [paper] + [Citation + link]
 
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© Structural Bioinformatics Group, Imperial College, London
Lawrence +Kelley, Michael Sternberg 
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Phyre2 is part of Genome3D
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