X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1wwtA_.92.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc1wwtA_.92.alig.html;h=ecb2d7708fbffa721f5856a321dc9911cf107b2e;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1wwtA_.92.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1wwtA_.92.alig.html new file mode 100644 index 0000000..ecb2d77 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c1wwtA_.92.alig.html @@ -0,0 +1,197 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c1wwtA_ + + + + + + + + + + +
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Return to main resultsRetrieve Phyre Job Id +
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Job DescriptionFER_CAPAN_1-144
Confidence16.64%DateWed Jan 4 12:02:18 GMT 2017
Rank92Aligned Residues36
% Identity17%Templatec1wwtA_
PDB infoPDB header:ligaseChain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic; +PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase +
ResolutionUNK
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  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment
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  51........60.........70.........80......
Predicted Secondary structure 
Query SS confidence 
Query Sequence KVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSC
Query Conservation  
      
          
  
 
  
Alig confidence 
Template Conservation  
 
 
   
     
  
  
   
    
Template Sequence PIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNT
Template Known Secondary structure 
TTS
TTT
SSTTTGGG
Template Predicted Secondary structure 
Template SS confidence 
  11........20.........30.........40......
 
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Download:Text versionFASTA version

No model constructed - rank, confidence too low

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Phyre is for non-commercial use only

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Commercial users please contact Michael Sternberg

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols +10, 845-858 (2015) + [paper] + [Citation + link]
 
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Lawrence +Kelley, Michael Sternberg 
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Phyre2 is part of Genome3D
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