Phyre 2 alignment of FER_CAPAN_1-144 with c2fugC

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2fugC_.46.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2fugC_.46.alig.html;h=eebd31469d7717c95b92cdcbee29e6686009aa6b;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2fugC_.46.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2fugC_.46.alig.html new file mode 100644 index 0000000..eebd314 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2fugC_.46.alig.html @@ -0,0 +1,292 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c2fugC_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 98.27% Date Wed Jan 4 12:02:18 GMT 2017
Rank 46 Aligned Residues 72
% Identity 25% Template c2fugC_
PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; +PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus +
Resolution 3.30 Å
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.												.	.
Query SS confidence																																					.	.	.	.	.	.												.	.
Query Sequence	V	K	L	I	T	P	D	G	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	.	.	.	.	.	.	A	G	S	C	S	S	C	A	G	K	I	.	.	A	G	G	A	V
Query Conservation																																					.	.	.	.	.	.												.	.
Alig confidence									.	.																											.	.	.	.	.	.												.	.					.
Template Conservation									.	.																																																		.
Template Sequence	V	R	V	K	V	N	D	R	.	.	I	V	E	V	P	P	G	T	S	V	M	D	A	V	F	H	A	G	Y	D	V	P	L	F	C	S	E	K	H	L	S	P	I	G	A	C	R	M	C	L	V	R	I	G	L	I	Q	W	Q	.
Template Known Secondary structure						S	S		.	.						T	T		B									T							S			T	T	S				S		S	T	T	S									B		.
Template Predicted Secondary structure									.	.																																																		.
Template SS confidence
	2	.	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence	D	Q	T	D	G	N	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	L	A	A	S	C	V	T	A	V	A	D	G	M	V	V	D	T	L	S	D	V
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S				T	T	T		B			T	T					S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.