X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2kmmA_.83.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2kmmA_.83.alig.html;h=99a955eefb4692ee8c2982974b7afe96f7bdf06e;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2kmmA_.83.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2kmmA_.83.alig.html new file mode 100644 index 0000000..99a955e --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2kmmA_.83.alig.html @@ -0,0 +1,199 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c2kmmA_ + + + + + + + + + + +
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Return to main resultsRetrieve Phyre Job Id +
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Job DescriptionFER_CAPAN_1-144
Confidence44.85%DateWed Jan 4 12:02:18 GMT 2017
Rank83Aligned Residues35
% Identity31%Templatec2kmmA_
PDB infoPDB header:hydrolaseChain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- +PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) +
ResolutionUNK
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  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment
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  51........60.........70.........80......
Predicted Secondary structure 
Query SS confidence 
Query Sequence KVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSC
Query Conservation  
      
          
  
 
  
Alig confidence 
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Template Conservation  
 
 
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Template Sequence EVMVFTPKG.EIKRLPQGATALDFAYSLHSDLGDHC
Template Known Secondary structure 
TT
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TT
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ST
Template Predicted Secondary structure 
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Template SS confidence 
  418.420.........430.........440.........450..
 
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Download:Text versionFASTA version

No model constructed - rank, confidence too low

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Phyre is for non-commercial use only

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Commercial users please contact Michael Sternberg

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols +10, 845-858 (2015) + [paper] + [Citation + link]
 
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© Structural Bioinformatics Group, Imperial College, London
Lawrence +Kelley, Michael Sternberg 
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Phyre2 is part of Genome3D
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