Phyre 2 alignment of FER_CAPAN_1-144 with c2mj3A

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2mj3A_.34.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2mj3A_.34.alig.html;h=d22d0abd8c40b64c502f6714e1384cb04ad5bfc8;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2mj3A_.34.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2mj3A_.34.alig.html new file mode 100644 index 0000000..d22d0ab --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2mj3A_.34.alig.html @@ -0,0 +1,279 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c2mj3A_ + + + + + + + + + + + +

+
+ + + + + +
Job Description FER_CAPAN_1-144
Confidence 99.60% Date Wed Jan 4 12:02:18 GMT 2017
Rank 34 Aligned Residues 91
% Identity 21% Template c2mj3A_
PDB info PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster binding protein; +PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments and structure of2 iron-sulfur cluster binding protein from ehrlichia chaffeensis +
Resolution UNK
+

+ + + + +

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

+

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

	51	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure										.																											.																	.	.	.	.	.	.	.
Query SS confidence										.																											.																	.	.	.	.	.	.	.
Query Sequence	K	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	.	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	.	.	.	.	.	.	.
Query Conservation										.																											.																	.	.	.	.	.	.	.
Alig confidence										.																											.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	I	T	F	I	S	P	D	G	S	R	K	T	Y	E	A	Y	D	G	E	T	L	L	S	L	A	H	R	N	N	V	D	L	E	G	A	C	E	G	S	L	A	C	S	T	C	H	V	I	I	D	P	S	W	Y	D	I	V	E	Q
Template Known Secondary structure							T	T	S									S	S			T							T	T											S				S
Template Predicted Secondary structure
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.

			102	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure	.	.											.																					.	.	.
Query SS confidence	.	.											.																					.	.	.
Query Sequence	.	.	A	V	D	Q	T	D	G	N	F	L	.	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	.	.	.	V	T	I	E	T	H	K	E	A	E
Query Conservation	.	.											.																					.	.	.
Alig confidence	.	.											.																					.	.	.
Template Conservation
Template Sequence	H	N	E	I	S	D	E	E	N	D	M	L	D	L	A	F	G	L	T	D	T	S	R	L	G	C	Q	I	I	L	T	K	E	L	D	G	L	C	V	I	L	P	T	E	T	R
Template Known Secondary structure		S				T	T										S			S	S			S		S	S					G	G	G	T	T						S	S	S
Template Predicted Secondary structure
Template SS confidence
	63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.