X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2piaA_.20.alig.txt;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2piaA_.20.alig.txt;h=9e5b450ca3f173fa33beec8d3ff0aa4af768f487;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git

diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2piaA_.20.alig.txt b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2piaA_.20.alig.txt
new file mode 100644
index 0000000..9e5b450
--- /dev/null
+++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2piaA_.20.alig.txt
@@ -0,0 +1,38 @@
+20 c2piaA_ Probab=99.89   E-value=6.3e-23  Score=151.75  Aligned_columns=116  Identities=22%
+
+Q ss_pred             CCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEECCCE
+Q ss_conf             921355554303354442000000034554100100013567766664089999926972
+Q FER_CAPAN_1-14    1 MASVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGP   60 (144)
+Q Consensus         1 m~~~~a~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~g~   60 (144)
+                      |.++...+  .++.+.+.+.+.|.+.+.....              .....|+|...+. 
+T Consensus       205 ~~~v~~~l--~~~~~~~i~~e~F~~~~~~~~~--------------~~~~~V~~~~~~~-  247 (321)
+T c2piaA_         205 MDTVRDMT--GHWPSGTVHFESFGATNTNARE--------------NTPFTVRLSRSGT-  247 (321)
+T ss_dssp             HHHHHHHT--TTSCTTCEEEECCCCCCCCCSC--------------CCCEEEEETTTCC-
+T ss_pred             HHHHHHHH--HCCCHHHCCHHHCCCCCCCCCC--------------CEEEEEEECCCCC-
+T ss_conf             99999997--3689767102110122233456--------------4048999868841-
+
+
+Q ss_pred             EEEEECCCCCHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCE
+Q ss_conf             999967998289999987897000233785876717994142115666668976834975
+Q FER_CAPAN_1-14   61 IEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGW  120 (144)
+Q Consensus        61 ~~~~~~~~~tiLdaa~~aGi~l~~sCr~G~CgtC~~~v~~G~v~~~~~~~l~~~~~~~g~  120 (144)
+                       +++++++++||+++|++|+++||+||.|+||+|++++++|+|++.+  .+.+++..+||
+T Consensus       248 -~~~~~~~~tlL~~~e~~g~~~~~~C~~G~Cg~C~~~~~~G~v~~~~--~~~~~~~~~~~  304 (321)
+T c2piaA_         248 -SFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRD--MVLRDDEKGTQ  304 (321)
+T ss_dssp             -EEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEECCC--SSCCTTTTTTE
+T ss_pred             -EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEECCC--CCCCHHHHCCE
+T ss_conf             -7995799819999998887987556788664416899413044057--78751761785
+
+
+Q ss_pred             EEEEEEEECCC-EEEEE
+Q ss_conf             99643245067-69992
+Q FER_CAPAN_1-14  121 VLTCVAYPQSD-VTIET  136 (144)
+Q Consensus       121 vL~C~s~p~sD-v~Ie~  136 (144)
+                      +|+|+++|.|| ++||+
+T Consensus       305 il~C~s~~~~~~~~idl  321 (321)
+T c2piaA_         305 IMVCVSRAKSAELVLDL  321 (321)
+T ss_dssp             EETTTCEESSSEEEECC
+T ss_pred             EEEEEEEECCCEEEEEC
+T ss_conf             88555244598079969
+
+