Phyre 2 alignment of FER_CAPAN_1-144 with c2w3rG

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2w3rG_.65.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc2w3rG_.65.alig.html;h=4f51d5f94b238fa9a88652c957fbc2811cfcffa2;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2w3rG_.65.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2w3rG_.65.alig.html new file mode 100644 index 0000000..4f51d5f --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c2w3rG_.65.alig.html @@ -0,0 +1,240 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c2w3rG_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 97.34% Date Wed Jan 4 12:02:18 GMT 2017
Rank 65 Aligned Residues 73
% Identity 15% Template c2w3rG_
PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:xanthine dehydrogenase; +PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine +
Resolution 2.90 Å
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

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	51	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																	.
Query SS confidence															.																	.
Query Sequence	K	V	K	L	I	T	P	D	G	P	I	E	F	D	.	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	.	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q	T	D	G
Query Conservation															.																	.
Alig confidence															.																	.
Template Conservation
Template Sequence	E	I	A	F	L	L	N	G	E	T	R	R	V	R	I	E	D	P	T	Q	S	L	L	E	W	L	R	A	E	G	L	T	G	T	K	E	G	C	N	E	G	D	C	G	A	C	T	V	M	I	R	D	A	A	G	S	R	A	V	N
Template Known Secondary structure							T	T								S		T	T		B									T		T	T	S			S		S	S	S	S	S		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.

	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	F	L	D	D	D	Q	L	E	E	G	W	V	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	C	L	M	M	L	P	Q	I	A	G	K	A	L	R
Template Known Secondary structure	T	T	T		B	G	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
	62	.	.	.	.	.	.	.	70	.	.	.	.	.	.