Phyre 2 alignment of FER_CAPAN_1-144 with c3lxfC

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc3lxfC_.33.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc3lxfC_.33.alig.html;h=026a6fab6f31d3666adfd2c0618b6dceae810579;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c3lxfC_.33.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c3lxfC_.33.alig.html new file mode 100644 index 0000000..026a6fa --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c3lxfC_.33.alig.html @@ -0,0 +1,273 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with c3lxfC_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.61% Date Wed Jan 4 12:02:18 GMT 2017
Rank 33 Aligned Residues 90
% Identity 24% Template c3lxfC_
PDB info PDB header:metal binding protein Chain: C: PDB Molecule:ferredoxin; +PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans +
Resolution 2.30 Å
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	51	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure										.																							.								.
Query SS confidence										.																							.								.
Query Sequence	K	V	K	L	I	T	P	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	.	L	P	Y	S	C	R	A	.	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q	T	D
Query Conservation										.																							.								.
Alig confidence										.																							.								.
Template Conservation
Template Sequence	A	I	L	V	T	T	R	D	G	T	R	T	E	I	Q	A	E	P	G	L	S	L	M	E	A	L	R	D	A	G	I	D	E	L	L	A	L	C	G	G	C	C	S	C	A	T	C	H	V	L	V	A	P	A	F	A	D	R	L	P
Template Known Secondary structure							T	T	S									T	T	S	B								T	T		T	T				T	T		S	S	S			S	T	T						G	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.

	108	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure								.	.	.	.	.	.	.																	.	.	.
Query SS confidence								.	.	.	.	.	.	.																	.	.	.
Query Sequence	G	N	F	L	D	D	D	.	.	.	.	.	.	.	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	.	.	.	D	V	T	I	E	T	H	K	E	A
Query Conservation								.	.	.	.	.	.	.																	.	.	.
Alig confidence								.	.	.	.	.	.	.																	.	.	.
Template Conservation
Template Sequence	A	L	S	G	D	E	N	D	L	L	D	S	S	D	H	R	T	P	H	S	R	L	S	C	Q	I	T	I	N	D	K	L	E	G	L	E	V	E	I	A	P	E	D
Template Known Secondary structure												T		T	T			T	T				G	G	G		B			G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
	63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.