X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc5frtC_.26.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fc5frtC_.26.alig.html;h=eb57fd7432b04ee1e59f67b0b439b345b036a49c;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/c5frtC_.26.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c5frtC_.26.alig.html new file mode 100644 index 0000000..eb57fd7 --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/c5frtC_.26.alig.html @@ -0,0 +1,315 @@ +
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  | Insertion relative to template | +
  | Deletion relative to template |
  | Catalytic residue from the CSA |
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Detailed help on interpreting your alignment |
  |   | +50 | . | . | . | . | . | . | . | + | + | + | + | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . |
Predicted Secondary structure |   | +![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | . | . | . | . | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||||
Query Sequence |   | +Y | K | V | K | L | I | T | P | . | +. | +. | +. | +D | G | P | I | E | F | D | C | P | D | N | V | Y | I | L | D | Q | A | E | E | A | G | H | D | L | P | Y | S | C | R | A | G | S | C | S | S | C | A | G | K | I | A | G | G | A | V | D | Q |
Template Sequence |   | +A | T | I | Y | F | S | S | P | L | M | P | H | N | K | K | V | Q | A | V | A | G | K | R | S | T | L | L | G | V | A | Q | E | N | G | V | K | I | P | F | E | C | Q | D | G | N | C | G | S | C | L | V | K | I | T | H | L | D | G | E | R |
Template Known Secondary structure |   | +![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | S | ![]() | ![]() | ![]() | ![]() | T | T | B | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | S | S | S | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | S | S | S | ||||||||||||||||||||
Template Predicted Secondary structure |   | +![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | |||||||||||||||||||||||||||||||
  |   | +2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . |
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  |   | +106 | . | . | . | 110 | . | . | . | . | . | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | + | . | . | . | . | . | . | . | . | . | |||
Predicted Secondary structure |   | +![]() | ![]() | ![]() | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | . | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||
Query Sequence |   | +T | D | G | N | F | L | D | D | D | Q | . | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +. | +L | E | E | G | W | V | L | T | C | V | A | Y | P | Q | S | . | +D | V | T | I | E | T | H | K | E | |||
Template Sequence |   | +I | K | G | M | L | L | T | D | K | E | R | N | V | L | K | S | V | G | K | L | P | K | S | E | E | E | R | A | A | V | R | D | L | P | P | T | Y | R | L | A | C | Q | T | I | V | T | D | E | D | L | L | V | E | F | T | G | E | |||
Template Known Secondary structure |   | +S | T | T | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | T | S | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | T | S | S | ![]() | ![]() | ![]() | ![]() | G | G | G | B | S | S | ![]() | ![]() | ![]() | ![]() | S | S | |||||||||||||||||||
Template Predicted Secondary structure |   | +![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ![]() | ||||||||||||||||||||||||||||
  |   | +62 | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |||
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Download: | Text version | +FASTA version | +
No model constructed - rank, confidence too low
+Phyre is for non-commercial use only
+Commercial users please contact Michael Sternberg
+Please cite: The Phyre2 web portal for protein modeling, prediction and analysis | |||||||||
Kelley LA et al. Nature Protocols +10, 845-858 (2015) + [paper] + [Citation + link] | |||||||||
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