X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1b9ra_.41.alig.txt;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1b9ra_.41.alig.txt;h=1eefbad3c8ff163cbeb2b27bd42bf37f70b38878;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git

diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1b9ra_.41.alig.txt b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1b9ra_.41.alig.txt
new file mode 100644
index 0000000..1eefbad
--- /dev/null
+++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1b9ra_.41.alig.txt
@@ -0,0 +1,26 @@
+41 d1b9ra_ Probab=99.52   E-value=1.6e-14  Score=103.84  Aligned_columns=88  Identities=22%
+
+Q ss_pred             EEEEEECCC-EEEEEECCCCCHHHHHHHCCCC-CEECCCC-CCCCCCCEEEECCCCCCCC
+Q ss_conf             999992697-2999967998289999987897-0002337-8587671799414211566
+Q FER_CAPAN_1-14   51 KVKLITPDG-PIEFDCPDNVYILDQAEEAGHD-LPYSCRA-GSCSSCAGKIAGGAVDQTD  107 (144)
+Q Consensus        51 ~V~~~~~~g-~~~~~~~~~~tiLdaa~~aGi~-l~~sCr~-G~CgtC~~~v~~G~v~~~~  107 (144)
+                      +|+|+.++| .++|++++|++|||+++++||+ +++.|.+ |.||+|+++|.+|.++...
+T Consensus         2 kit~~~~dg~~~~i~~~~G~~Ll~~~~~~gi~~~~~~cgG~g~CgtC~v~v~~g~~~~l~   61 (105)
+T d1b9ra_           2 RVVFIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVG   61 (105)
+T ss_dssp             EEEECCTTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHT
+T ss_pred             EEEEECCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCC
+T ss_conf             699974999889999479985789999879985655468831220369998358745667
+
+
+Q ss_pred             CCCCCHHHH--------CCCEEEEEEEEECCC---EEEEECC
+Q ss_conf             666897683--------497599643245067---6999248
+Q FER_CAPAN_1-14  108 GNFLDDDQL--------EEGWVLTCVAYPQSD---VTIETHK  138 (144)
+Q Consensus       108 ~~~l~~~~~--------~~g~vL~C~s~p~sD---v~Ie~~~  138 (144)
+                      .....+++.        .+|++|+||.++..|   ++|++|.
+T Consensus        62 ~~~~~E~~~L~~~~~~~~~~~RLaCQ~~v~~~~dg~~V~iP~  103 (105)
+T d1b9ra_          62 EANPDENDLLQSTGEPMTAGTRLSCQVFIDPSMDGLIVRVPL  103 (105)
+T ss_dssp             CCCTTHHHHHHTSCCCCCTTBSCGGGCCCCTTSTTEEEECCS
+T ss_pred             CCCHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEECCC
+T ss_conf             999889988400234678870668888987766816998147
+
+