Phyre 2 alignment of FER_CAPAN_1-144 with d1czpa

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1czpa_.12.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1czpa_.12.alig.html;h=5c2645eab8db413f1927973b26ebcb3171db9bc8;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1czpa_.12.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1czpa_.12.alig.html new file mode 100644 index 0000000..5c2645e --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1czpa_.12.alig.html @@ -0,0 +1,255 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d1czpa_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.94% Date Wed Jan 4 12:02:18 GMT 2017
Rank 12 Aligned Residues 95
% Identity 64% Template d1czpa_
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin-related +
Resolution 1.17
Model Dimensions (Å) X:34.376 Y:28.764 Z:25.674 +
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

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	48	.	50	.	.	.	.	.	.	.		.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure											.			.
Query SS confidence											.			.
Query Sequence	A	S	Y	K	V	K	L	I	T	P	.	D	G	.	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q
Query Conservation											.			.
Alig confidence											.			.
Template Conservation
Template Sequence	A	T	F	K	V	T	L	I	N	E	A	E	G	T	K	H	E	I	E	V	P	D	D	E	Y	I	L	D	A	A	E	E	Q	G	Y	D	L	P	F	S	C	R	A	G	A	C	S	T	C	A	G	K	L	V	S	G	T	V	D	Q
Template Known Secondary structure										T	T	T	T									T	T	S									T	T						S	S	S	S	S	S	S	S	T	T							S
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60

	106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	D	G	N	F	L	D	D	D	Q	L	E	E	G	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	D	Q	S	F	L	D	D	D	Q	I	E	A	G	Y	V	L	T	C	V	A	Y	P	T	S	D	V	V	I	Q	T	H	K	E	E	D	L
Template Known Secondary structure	T	T			S	S							T	T				G	G	G				S	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.