X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1doia_.22.alig.txt;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1doia_.22.alig.txt;h=2b1c9c8a97e7222d6d2928d21dc3ea458e3503d4;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git

diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1doia_.22.alig.txt b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1doia_.22.alig.txt
new file mode 100644
index 0000000..2b1c9c8
--- /dev/null
+++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1doia_.22.alig.txt
@@ -0,0 +1,26 @@
+22 d1doia_ Probab=99.86   E-value=2.7e-21  Score=142.48  Aligned_columns=83  Identities=34%
+
+Q ss_pred             CCCEEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCCCCEEEECCCCCCCCCCCCCHHHH
+Q ss_conf             697299996799828999998789700023378587671799414211566666897683
+Q FER_CAPAN_1-14   57 PDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQL  116 (144)
+Q Consensus        57 ~~g~~~~~~~~~~tiLdaa~~aGi~l~~sCr~G~CgtC~~~v~~G~v~~~~~~~l~~~~~  116 (144)
+                      .....+|++++|+|||||++++||++||+||+|.||+|+++|++|+|++.....|++++.
+T Consensus        34 ~~~~~tiev~~GetILdAa~~aGi~ip~sCr~G~CgtC~v~vvsG~v~~~~~~~l~~~e~   93 (128)
+T d1doia_          34 DEDYGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEV   93 (128)
+T ss_dssp             TTTEEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHH
+T ss_pred             CCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHH
+T ss_conf             886237996888738999998689655479998768750899623136876555896574
+
+
+Q ss_pred             CC-CEEEEEEEEECCC-EEEEECCH
+Q ss_conf             49-7599643245067-69992484
+Q FER_CAPAN_1-14  117 EE-GWVLTCVAYPQSD-VTIETHKE  139 (144)
+Q Consensus       117 ~~-g~vL~C~s~p~sD-v~Ie~~~e  139 (144)
+                      .+ ||+|+|+++|.+| +.|.....
+T Consensus        94 ~~~g~~LaC~a~p~sD~v~I~~~~~  118 (128)
+T d1doia_          94 EDKNVRLTCIGSPDADEVKIVYNAK  118 (128)
+T ss_dssp             HTSCEEEGGGEEECSSEEEEEECGG
+T ss_pred             HCCCEEEEEEEEECCCEEEEEEECH
+T ss_conf             0187688543123278189997316
+
+