Phyre 2 alignment of FER_CAPAN_1-144 with d1e0za

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1e0za_.23.alig.html;fp=examples%2Ftestdata%2Fphyre2results%2F56da5616b4559c93%2Faligs%2Fd1e0za_.23.alig.html;h=793c8caf01510c1369643a9fcf01fb8dbf29b455;hb=42ca4613b0a07bab7c27a61b11acafdc9a3c27d1;hp=0000000000000000000000000000000000000000;hpb=f1ad88cc8d9b26244086e5c24b73fb80b0ff0a38;p=jalview.git diff --git a/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1e0za_.23.alig.html b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1e0za_.23.alig.html new file mode 100644 index 0000000..793c8ca --- /dev/null +++ b/examples/testdata/phyre2results/56da5616b4559c93/aligs/d1e0za_.23.alig.html @@ -0,0 +1,239 @@ + +Phyre 2 alignment of FER_CAPAN_1-144 with d1e0za_ + + + + + + + + + + + +

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Job Description FER_CAPAN_1-144
Confidence 99.84% Date Wed Jan 4 12:02:18 GMT 2017
Rank 23 Aligned Residues 85
% Identity 34% Template d1e0za_
SCOP info beta-Grasp (ubiquitin-like) + 2Fe-2S ferredoxin-like + 2Fe-2S ferredoxin-related +
Resolution UNK
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	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

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	57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	D	G	P	I	E	F	D	C	P	D	N	V	Y	I	L	D	Q	A	E	E	A	G	H	D	L	P	Y	S	C	R	A	G	S	C	S	S	C	A	G	K	I	A	G	G	A	V	D	Q	T	D	G	N	F	L	D	D	D	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	E	D	Y	G	T	M	E	V	A	E	G	E	Y	I	L	E	A	A	E	A	Q	G	Y	D	W	P	F	S	C	R	A	G	A	C	A	N	C	A	S	I	V	K	E	G	E	I	D	M	D	M	Q	Q	I	L	S	D	E	E	V
Template Known Secondary structure	T	T	T	S							T	T									T	T	T						S	S		S	S	S	S	S	T	T							S						S				S
Template Predicted Secondary structure
Template SS confidence
	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.

	117	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence	E	E	G	.	W	V	L	T	C	V	A	Y	P	Q	S	D	V	T	I	E	T	H	K	E	A	E	L
Query Conservation				.
Alig confidence				.													.
Template Conservation																	.
Template Sequence	E	E	K	D	V	R	L	T	C	I	G	S	P	A	A	D	.	E	V	K	I	V	Y	N	A	H	L
Template Known Secondary structure			T					S	S	S					S	S	.
Template Predicted Secondary structure																	.
Template SS confidence
	94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.